Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   1.7  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   3.9  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   3.9  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    26   3.9  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   3.9  
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    25   5.2  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    25   5.2  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    25   5.2  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   5.2  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 168  APTITLDHTFIDRLKDTKALKHKQYTFRYKN---LVKSKLDLNIKP 40
            AP+I  DH   +      A+K   Y+ RY+    LV + + +NIKP
Sbjct: 1205 APSIIPDHRPPEGWPSHGAIKFDHYSVRYRENLPLVLNDISVNIKP 1250


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 404 FSCYGEYPFGAGAIWDCYRGF 342
           F CY E P G  AI  C + F
Sbjct: 293 FLCYSEKPNGINAIMKCMKNF 313


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 86  LNVYCLCFSALVSFKRSI 139
           L VYC  F  LVS+KRS+
Sbjct: 521 LAVYCDTFDVLVSYKRSL 538


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 93  TFRYKNLVKSKLDLNIKPLKMAAT 22
           T   K L K KLDL++KP ++ AT
Sbjct: 562 TLMDKLLKKEKLDLHLKPYRILAT 585


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -2

Query: 169 SSYDYPGSH---LY*SFERH*STKA 104
           SSY YP SH    Y SF+RH S+ +
Sbjct: 158 SSYSYPSSHQDPAYSSFKRHRSSNS 182


>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 296 NRKRWQQYIKAQKPVQSLYNSPRLPRPRTGTL 391
           N  +  +Y   +KP+Q+   S RL +PRT  +
Sbjct: 88  NEDKAMKYGNGKKPIQTQTLSGRLQKPRTNLM 119


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 281 GGWVDNRKRWQQYIKAQKPVQSLYNSPRLP 370
           GG +D  + W Q  +A+   Q  Y   R+P
Sbjct: 292 GGCIDREEEWIQQFQARCIKQYFYGDDRMP 321


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = -1

Query: 395 YGEYPFGAGAIWDCYRGFVLASEL*YIAATFSDYRPSHLARYQEGDFIVCLPVP 234
           YG  P G GA W C      A E     A F   R  H+ R+    F  CLP P
Sbjct: 55  YGSTPAG-GAEW-CSE----ALERSRPRAAFKQQRRRHVPRWISDSFRTCLPKP 102


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 268 RKVTSSSVCRCRFWAGPSSPYASRFILMPNKVQSSYDYPG 149
           + V S +    + W+ PS+P A ++ +      +SY Y G
Sbjct: 38  KAVPSETAAEVKEWSMPSAPTAPKYDVDFTSALNSYKYEG 77


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 286 ATLLGIRKVTSSSVCRCRFWAGPSSPYASRF 194
           A   G   V  +S  RCRFW     P+A+ +
Sbjct: 345 ALTCGKNVVDEASCERCRFWIESEPPHANLY 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,036,694
Number of Sequences: 5004
Number of extensions: 39228
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)