Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55...    27   9.1  
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939...    27   9.1  

>06_01_0065 +
           549972-550770,551577-552190,552392-552544,552769-552885,
           552972-553076,553269-553334,553430-553494,553577-553778,
           554026-554169,554212-554340
          Length = 797

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 426 IIKDIMPCLAEFHNQGGSRMGD 491
           I+  +M C+ E+H Q GS  GD
Sbjct: 311 IVTQLMTCMDEYHQQIGSGSGD 332


>01_06_1818 -
           40093327-40093384,40093501-40093580,40093661-40093946,
           40095007-40095291,40095386-40095513,40095625-40096560,
           40096650-40096712,40096801-40096854,40096963-40097139,
           40097452-40097583,40097666-40097785,40097935-40098627,
           40098760-40099158,40099263-40099271
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 201 DAYGDDGPAQKRHRQTDDEV 260
           D YGDDG A KR  Q   EV
Sbjct: 719 DCYGDDGSASKRMLQVIQEV 738


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,837
Number of Sequences: 37544
Number of extensions: 282697
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)