Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320F01f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL354733-12|CAI16022.1| 379|Homo sapiens heterogeneous nuclear ... 73 6e-13
AB209562-1|BAD92799.1| 442|Homo sapiens heterogeneous nuclear r... 73 6e-13
AL354733-9|CAI16019.1| 428|Homo sapiens heterogeneous nuclear r... 64 4e-10
S74678-1|AAB20770.1| 463|Homo sapiens heterogeneous nuclear rib... 62 9e-10
CR456771-1|CAG33052.1| 464|Homo sapiens HNRPK protein. 62 9e-10
BC014980-1|AAH14980.1| 463|Homo sapiens heterogeneous nuclear r... 62 9e-10
BC000355-1|AAH00355.1| 464|Homo sapiens heterogeneous nuclear r... 62 9e-10
AL354733-11|CAI16021.1| 464|Homo sapiens heterogeneous nuclear ... 62 9e-10
AL354733-10|CAI16020.1| 463|Homo sapiens heterogeneous nuclear ... 62 9e-10
X72727-1|CAA51267.1| 464|Homo sapiens transformation upregulate... 62 2e-09
AY911506-1|AAW84289.1| 464|Homo sapiens heterogeneous nuclear r... 61 3e-09
AL354733-8|CAI16018.1| 306|Homo sapiens heterogeneous nuclear r... 51 2e-06
DQ341263-1|ABC67466.1| 1471|Homo sapiens Fanconi anemia, complem... 29 7.5
AK022613-1|BAB14132.1| 664|Homo sapiens protein ( Homo sapiens ... 29 7.5
AF340183-1|AAK15369.1| 1451|Homo sapiens Fanconi anemia compleme... 29 7.5
AF273251-2|AAK18772.1| 1471|Homo sapiens Fanconi anemia compleme... 29 7.5
AF273251-1|AAK18773.1| 1451|Homo sapiens Fanconi anemia compleme... 29 7.5
AF230336-1|AAL05980.1| 1471|Homo sapiens Fanconi anemia compleme... 29 7.5
>AL354733-12|CAI16022.1| 379|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 379
Score = 72.9 bits (171), Expect = 6e-13
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Frame = +3
Query: 213 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 386
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 387 LSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIH 521
LSI+A D ET+ EI+K I+P L E+ + GS D + ++R+LIH
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEEYQHYKGS---DFDCELRLLIH 128
>AB209562-1|BAD92799.1| 442|Homo sapiens heterogeneous nuclear
ribonucleoprotein K isoform a variant protein.
Length = 442
Score = 72.9 bits (171), Expect = 6e-13
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Frame = +3
Query: 213 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 386
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 30 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 89
Query: 387 LSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRMLIH 521
LSI+A D ET+ EI+K I+P L E+ + GS D + ++R+LIH
Sbjct: 90 LSISA-DIETIGEILKKIIPTLEEYQHYKGS---DFDCELRLLIH 130
>AL354733-9|CAI16019.1| 428|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 428
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/65 (50%), Positives = 47/65 (72%)
Frame = +3
Query: 327 LRSQYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDV 506
LR+ Y AS++VPD GPER+LSI+A D ET+ EI+K I+P L E+ + GS D + ++
Sbjct: 57 LRTDYNASVSVPDSSGPERILSISA-DIETIGEILKKIIPTLEEYQHYKGS---DFDCEL 112
Query: 507 RMLIH 521
R+LIH
Sbjct: 113 RLLIH 117
>S74678-1|AAB20770.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein complex K protein.
Length = 463
Score = 62.5 bits (145), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 213 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 386
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 387 LSITAEDDETLVEIIKDIMPCLAE 458
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>CR456771-1|CAG33052.1| 464|Homo sapiens HNRPK protein.
Length = 464
Score = 62.5 bits (145), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 213 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 386
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 387 LSITAEDDETLVEIIKDIMPCLAE 458
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>BC014980-1|AAH14980.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 463
Score = 62.5 bits (145), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 213 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 386
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 387 LSITAEDDETLVEIIKDIMPCLAE 458
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>BC000355-1|AAH00355.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 464
Score = 62.5 bits (145), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 213 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 386
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 387 LSITAEDDETLVEIIKDIMPCLAE 458
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>AL354733-11|CAI16021.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 464
Score = 62.5 bits (145), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 213 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 386
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 387 LSITAEDDETLVEIIKDIMPCLAE 458
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>AL354733-10|CAI16020.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 463
Score = 62.5 bits (145), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +3
Query: 213 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 386
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 387 LSITAEDDETLVEIIKDIMPCLAE 458
LSI+A D ET+ EI+K I+P L E
Sbjct: 88 LSISA-DIETIGEILKKIIPTLEE 110
>X72727-1|CAA51267.1| 464|Homo sapiens transformation upregulated
nuclear protein protein.
Length = 464
Score = 61.7 bits (143), Expect = 2e-09
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +3
Query: 231 KRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERVLSITAE 404
KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+LSI+A
Sbjct: 34 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISA- 92
Query: 405 DDETLVEIIKDIMPCLAE 458
D ET+ EI+K I+P L E
Sbjct: 93 DIETIGEILKKIIPTLEE 110
>AY911506-1|AAW84289.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K transcript variant protein.
Length = 464
Score = 60.9 bits (141), Expect = 3e-09
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = +3
Query: 213 DDGPAQKRHRQTDD--EVTFLIPSKVAXXXXXXXXXXXXXLRSQYKASITVPDCPGPERV 386
++ A KR R TD+ E+ L+ SK A LR+ Y AS++VPD GPER+
Sbjct: 28 EEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERI 87
Query: 387 LSITAEDDETLVEIIKDIMPCLAE 458
LSI+ D ET+ EI+K I+P L E
Sbjct: 88 LSIST-DIETIGEILKKIIPTLEE 110
>AL354733-8|CAI16018.1| 306|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 306
Score = 51.2 bits (117), Expect = 2e-06
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +3
Query: 336 QYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAE 458
QY AS++VPD GPER+LSI+A D ET+ EI+K I+P L E
Sbjct: 2 QYNASVSVPDSSGPERILSISA-DIETIGEILKKIIPTLEE 41
>DQ341263-1|ABC67466.1| 1471|Homo sapiens Fanconi anemia,
complementation group D2 protein.
Length = 1471
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 443 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 360
H I NDF + FV+ SC G++PF A++
Sbjct: 654 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 684
>AK022613-1|BAB14132.1| 664|Homo sapiens protein ( Homo sapiens
cDNA FLJ12551 fis, clone NT2RM4000700. ).
Length = 664
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 443 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 360
H I NDF + FV+ SC G++PF A++
Sbjct: 458 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 488
>AF340183-1|AAK15369.1| 1451|Homo sapiens Fanconi anemia
complementation group D2 protein protein.
Length = 1451
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 443 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 360
H I NDF + FV+ SC G++PF A++
Sbjct: 654 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 684
>AF273251-2|AAK18772.1| 1471|Homo sapiens Fanconi anemia
complementation group D2 protein, isoform 1 protein.
Length = 1471
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 443 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 360
H I NDF + FV+ SC G++PF A++
Sbjct: 654 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 684
>AF273251-1|AAK18773.1| 1451|Homo sapiens Fanconi anemia
complementation group D2 protein, isoform 2 protein.
Length = 1451
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 443 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 360
H I NDF + FV+ SC G++PF A++
Sbjct: 654 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 684
>AF230336-1|AAL05980.1| 1471|Homo sapiens Fanconi anemia
complementation group D2 protein protein.
Length = 1471
Score = 29.5 bits (63), Expect = 7.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -1
Query: 443 HDIFNDFHERFVIFSCY---GEYPFGAGAIW 360
H I NDF + FV+ SC G++PF A++
Sbjct: 654 HTICNDFQDAFVVDSCVVPEGDFPFPVKALY 684
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,752,734
Number of Sequences: 237096
Number of extensions: 1524365
Number of successful extensions: 6973
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6961
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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