Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320F01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 55 3e-08
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 55 3e-08
U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical pr... 32 0.22
AF026215-3|AAB71323.3| 563|Caenorhabditis elegans Hypothetical ... 28 3.5
AC025726-26|AAK73933.2| 129|Caenorhabditis elegans Hypothetical... 28 4.7
Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical pr... 27 6.2
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 27 6.2
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 27 6.2
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 55.2 bits (127), Expect = 3e-08
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Frame = +3
Query: 192 MKRDAYGDDGPAQKRHRQ--TDD----------EVTFLIPSKVAXXXXXXXXXXXXXLRS 335
MKR+ DDG RH++ TD EV L+ SK A LR+
Sbjct: 1 MKREHDNDDGDRTGRHKRPKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRA 60
Query: 336 QYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRML 515
++ A + VPD PERV ++TA D++T++ I+KD++P L + ++ +VRML
Sbjct: 61 EFNAHVQVPDSNTPERVCTVTA-DEKTVLNILKDVLPRLEDNFSE------RDPCEVRML 113
Query: 516 IH 521
+H
Sbjct: 114 VH 115
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 55.2 bits (127), Expect = 3e-08
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Frame = +3
Query: 192 MKRDAYGDDGPAQKRHRQ--TDD----------EVTFLIPSKVAXXXXXXXXXXXXXLRS 335
MKR+ DDG RH++ TD EV L+ SK A LR+
Sbjct: 18 MKREHDNDDGDRTGRHKRPKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRA 77
Query: 336 QYKASITVPDCPGPERVLSITAEDDETLVEIIKDIMPCLAEFHNQGGSRMGDQELDVRML 515
++ A + VPD PERV ++TA D++T++ I+KD++P L + ++ +VRML
Sbjct: 78 EFNAHVQVPDSNTPERVCTVTA-DEKTVLNILKDVLPRLEDNFSE------RDPCEVRML 130
Query: 516 IH 521
+H
Sbjct: 131 VH 132
>U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical
protein F26B1.2e protein.
Length = 93
Score = 32.3 bits (70), Expect = 0.22
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Frame = +3
Query: 192 MKRDAYGDDGPAQKRHRQ--TDD----------EVTFLIPSKVAXXXXXXXXXXXXXLRS 335
MKR+ DDG RH++ TD EV L+ SK A LR+
Sbjct: 18 MKREHDNDDGDRTGRHKRPKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRA 77
Query: 336 QYKASITVPDCPGPER 383
++ A + VPD PER
Sbjct: 78 EFNAHVQVPDSNTPER 93
>AF026215-3|AAB71323.3| 563|Caenorhabditis elegans Hypothetical
protein F09G2.5 protein.
Length = 563
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 422 HERFVIFSCYGEYPFGAG-AIWDCYRGFVLASEL 324
++RFV C G YP G A W C +G+++ L
Sbjct: 304 NKRFV--KCAGPYPMFRGEAAWSCIQGYIVMKRL 335
>AC025726-26|AAK73933.2| 129|Caenorhabditis elegans Hypothetical
protein Y71G12B.7 protein.
Length = 129
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 431 NDFHERFVIFSCYGEYPFGAGAIW 360
N H R IF C+GE+ F IW
Sbjct: 94 NCIHSRLSIFFCFGEFMFILKLIW 117
>Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical
protein F55D12.2 protein.
Length = 712
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 418 SWKSLKISCRAWQNFITRVD 477
SW S +I + WQN++ VD
Sbjct: 151 SWLSKRIEIKKWQNYLVEVD 170
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -3
Query: 183 PIKFRAPTITLDHTFIDRLKDTKALKHKQYTFRYKNLVKSKLDLNIKPLKMAAT 22
PI + + L HT + L+ + QY Y L K K +++AAT
Sbjct: 1787 PISKKTMKVDLSHTELSHLRKGRMTTESQYAHDYGILTDKKHVNRFKSVRVAAT 1840
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -3
Query: 183 PIKFRAPTITLDHTFIDRLKDTKALKHKQYTFRYKNLVKSKLDLNIKPLKMAAT 22
PI + + L HT + L+ + QY Y L K K +++AAT
Sbjct: 1787 PISKKTMKVDLSHTELSHLRKGRMTTESQYAHDYGILTDKKHVNRFKSVRVAAT 1840
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,415,701
Number of Sequences: 27780
Number of extensions: 227388
Number of successful extensions: 548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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