Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320E12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 127 5e-30
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 127 5e-30
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 127 5e-30
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 93 8e-20
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 93 8e-20
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 93 8e-20
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 71 4e-13
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 71 4e-13
AL132862-27|CAB60564.1| 682|Caenorhabditis elegans Hypothetical... 29 2.7
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical pr... 28 4.7
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 127 bits (306), Expect = 5e-30
Identities = 58/142 (40%), Positives = 90/142 (63%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
SN+ AG Q+Q D+G++ I +L D QKEAAWAI+N+ + G P Q++ M+
Sbjct: 344 SNITAGNQQQVQDVFDAGIMPMIIHLLDRGDFPTQKEAAWAISNVTISGRPNQVEQMVKL 403
Query: 183 DILSPYCALLQARDHRAIIVVLDGLTHLLQAAAKYDQVRGMCIKLEEIGALDQIENLQQH 362
+L P+CA+L D + I VVLDG+ ++L+ A + + ++EE G LD+IENLQ H
Sbjct: 404 GVLRPFCAMLSCTDSQIIQVVLDGINNILKMAG--EAAEQVTSEIEECGGLDKIENLQNH 461
Query: 363 ENEQIYKKSIHILDSYFMEEED 428
ENE IYK + I+D++F +++
Sbjct: 462 ENEDIYKLAFEIIDNFFSSDDE 483
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = +3
Query: 6 NVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSCD 185
N+ GT Q Q +DSGVL + +L H+ K KEA W ++N+ G +Q+ +
Sbjct: 303 NIVTGTDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNI-TAGNQQQVQDVFDAG 361
Query: 186 ILSPYCALLQARD 224
I+ LL D
Sbjct: 362 IMPMIIHLLDRGD 374
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +3
Query: 27 PQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCA 206
P I I SG+L + + L D Q EAAWA+TN+ GT EQ A+++ + +
Sbjct: 99 PPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIA-SGTSEQTQAVVNAGAVPLFLQ 157
Query: 207 LL 212
LL
Sbjct: 158 LL 159
Score = 34.7 bits (76), Expect = 0.041
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
+N+ +GT+ Q Q +++G + ++L ++ +++ WA+ N+ +G P D L
Sbjct: 133 TNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALGNI-IGDGPHFRDYCLEL 191
Query: 183 DILSP 197
IL P
Sbjct: 192 GILQP 196
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 66 PIARVLVHH-DIKCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIV 242
P +L+HH D + WA++ L GG E + ++ +++ LL D +
Sbjct: 238 PALSLLIHHQDTNILIDTVWALSYLTDGGN-EHIQMVIEAQVVTHLVPLLGHVDVKVQTA 296
Query: 243 VLDGLTHLLQAAAKYDQVRGMCIKLEEIGALDQIENLQQHENEQIYKKSI 392
L + +++ + Q+ + + G L + L H E+I K+++
Sbjct: 297 ALRAVGNIVTGTDEQTQL------VLDSGVLRFMPGLLAHYKEKINKEAV 340
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 127 bits (306), Expect = 5e-30
Identities = 58/142 (40%), Positives = 90/142 (63%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
SN+ AG Q+Q D+G++ I +L D QKEAAWAI+N+ + G P Q++ M+
Sbjct: 344 SNITAGNQQQVQDVFDAGIMPMIIHLLDRGDFPTQKEAAWAISNVTISGRPNQVEQMVKL 403
Query: 183 DILSPYCALLQARDHRAIIVVLDGLTHLLQAAAKYDQVRGMCIKLEEIGALDQIENLQQH 362
+L P+CA+L D + I VVLDG+ ++L+ A + + ++EE G LD+IENLQ H
Sbjct: 404 GVLRPFCAMLSCTDSQIIQVVLDGINNILKMAG--EAAEQVTSEIEECGGLDKIENLQNH 461
Query: 363 ENEQIYKKSIHILDSYFMEEED 428
ENE IYK + I+D++F +++
Sbjct: 462 ENEDIYKLAFEIIDNFFSSDDE 483
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = +3
Query: 6 NVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSCD 185
N+ GT Q Q +DSGVL + +L H+ K KEA W ++N+ G +Q+ +
Sbjct: 303 NIVTGTDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNI-TAGNQQQVQDVFDAG 361
Query: 186 ILSPYCALLQARD 224
I+ LL D
Sbjct: 362 IMPMIIHLLDRGD 374
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +3
Query: 27 PQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCA 206
P I I SG+L + + L D Q EAAWA+TN+ GT EQ A+++ + +
Sbjct: 99 PPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIA-SGTSEQTQAVVNAGAVPLFLQ 157
Query: 207 LL 212
LL
Sbjct: 158 LL 159
Score = 34.7 bits (76), Expect = 0.041
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
+N+ +GT+ Q Q +++G + ++L ++ +++ WA+ N+ +G P D L
Sbjct: 133 TNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALGNI-IGDGPHFRDYCLEL 191
Query: 183 DILSP 197
IL P
Sbjct: 192 GILQP 196
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 66 PIARVLVHH-DIKCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIV 242
P +L+HH D + WA++ L GG E + ++ +++ LL D +
Sbjct: 238 PALSLLIHHQDTNILIDTVWALSYLTDGGN-EHIQMVIEAQVVTHLVPLLGHVDVKVQTA 296
Query: 243 VLDGLTHLLQAAAKYDQVRGMCIKLEEIGALDQIENLQQHENEQIYKKSI 392
L + +++ + Q+ + + G L + L H E+I K+++
Sbjct: 297 ALRAVGNIVTGTDEQTQL------VLDSGVLRFMPGLLAHYKEKINKEAV 340
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 127 bits (306), Expect = 5e-30
Identities = 58/142 (40%), Positives = 90/142 (63%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
SN+ AG Q+Q D+G++ I +L D QKEAAWAI+N+ + G P Q++ M+
Sbjct: 253 SNITAGNQQQVQDVFDAGIMPMIIHLLDRGDFPTQKEAAWAISNVTISGRPNQVEQMVKL 312
Query: 183 DILSPYCALLQARDHRAIIVVLDGLTHLLQAAAKYDQVRGMCIKLEEIGALDQIENLQQH 362
+L P+CA+L D + I VVLDG+ ++L+ A + + ++EE G LD+IENLQ H
Sbjct: 313 GVLRPFCAMLSCTDSQIIQVVLDGINNILKMAG--EAAEQVTSEIEECGGLDKIENLQNH 370
Query: 363 ENEQIYKKSIHILDSYFMEEED 428
ENE IYK + I+D++F +++
Sbjct: 371 ENEDIYKLAFEIIDNFFSSDDE 392
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = +3
Query: 6 NVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSCD 185
N+ GT Q Q +DSGVL + +L H+ K KEA W ++N+ G +Q+ +
Sbjct: 212 NIVTGTDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNI-TAGNQQQVQDVFDAG 270
Query: 186 ILSPYCALLQARD 224
I+ LL D
Sbjct: 271 IMPMIIHLLDRGD 283
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +3
Query: 27 PQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCA 206
P I I SG+L + + L D Q EAAWA+TN+ GT EQ A+++ + +
Sbjct: 8 PPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIA-SGTSEQTQAVVNAGAVPLFLQ 66
Query: 207 LL 212
LL
Sbjct: 67 LL 68
Score = 34.7 bits (76), Expect = 0.041
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
+N+ +GT+ Q Q +++G + ++L ++ +++ WA+ N+ +G P D L
Sbjct: 42 TNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALGNI-IGDGPHFRDYCLEL 100
Query: 183 DILSP 197
IL P
Sbjct: 101 GILQP 105
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 66 PIARVLVHH-DIKCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIV 242
P +L+HH D + WA++ L GG E + ++ +++ LL D +
Sbjct: 147 PALSLLIHHQDTNILIDTVWALSYLTDGGN-EHIQMVIEAQVVTHLVPLLGHVDVKVQTA 205
Query: 243 VLDGLTHLLQAAAKYDQVRGMCIKLEEIGALDQIENLQQHENEQIYKKSI 392
L + +++ + Q+ + + G L + L H E+I K+++
Sbjct: 206 ALRAVGNIVTGTDEQTQL------VLDSGVLRFMPGLLAHYKEKINKEAV 249
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 93.5 bits (222), Expect = 8e-20
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
SN+ AGT QIQ +D+ +L + VL D KCQ EA+WA++NL GGT Q+ AML
Sbjct: 370 SNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKCQFEASWALSNLAQGGTNRQVVAMLED 429
Query: 183 DILSPYC-ALLQARDHRAIIVVLDGLTHLLQAAAKY-DQVRGMCIKLEEIGALDQIENLQ 356
+++ C ALLQ + T +L Y +V + ++EE G LD +E LQ
Sbjct: 430 NVVPALCQALLQTNTDMLNNTLETLYTLMLTVQNGYPHKVDILHDQVEENGGLDSLERLQ 489
Query: 357 QHENEQIYKKSIHILDSYFMEEEDASTQPAHDHEQYQ 467
+ ++EQIY ++ I+ +F ++DA + +H++ Q
Sbjct: 490 ESQSEQIYTQAYRIITQFF-TDDDAGEKESHENADPQ 525
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/103 (29%), Positives = 47/103 (45%)
Frame = +3
Query: 27 PQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCA 206
P I I G+L+ + + L + + Q EAAWA+TN+ G T EQ A + + P
Sbjct: 123 PPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGST-EQTIAAVEAGVTIP--- 178
Query: 207 LLQARDHRAIIVVLDGLTHLLQAAAKYDQVRGMCIKLEEIGAL 335
L+ H++ + L + A Q+R IK + AL
Sbjct: 179 LIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEAL 221
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/74 (24%), Positives = 39/74 (52%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
+N+ +G+ Q A+++GV P+ + VH + ++A WA+ N+ G + + D ++ C
Sbjct: 157 TNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALWAVANIA-GDSSQLRDYVIKC 215
Query: 183 DILSPYCALLQARD 224
+ L++ D
Sbjct: 216 HGVEALMHLMEKVD 229
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 93.5 bits (222), Expect = 8e-20
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
SN+ AGT QIQ +D+ +L + VL D KCQ EA+WA++NL GGT Q+ AML
Sbjct: 370 SNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKCQFEASWALSNLAQGGTNRQVVAMLED 429
Query: 183 DILSPYC-ALLQARDHRAIIVVLDGLTHLLQAAAKY-DQVRGMCIKLEEIGALDQIENLQ 356
+++ C ALLQ + T +L Y +V + ++EE G LD +E LQ
Sbjct: 430 NVVPALCQALLQTNTDMLNNTLETLYTLMLTVQNGYPHKVDILHDQVEENGGLDSLERLQ 489
Query: 357 QHENEQIYKKSIHILDSYFMEEEDASTQPAHDHEQYQ 467
+ ++EQIY ++ I+ +F ++DA + +H++ Q
Sbjct: 490 ESQSEQIYTQAYRIITQFF-TDDDAGEKESHENADPQ 525
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/103 (29%), Positives = 47/103 (45%)
Frame = +3
Query: 27 PQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCA 206
P I I G+L+ + + L + + Q EAAWA+TN+ G T EQ A + + P
Sbjct: 123 PPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGST-EQTIAAVEAGVTIP--- 178
Query: 207 LLQARDHRAIIVVLDGLTHLLQAAAKYDQVRGMCIKLEEIGAL 335
L+ H++ + L + A Q+R IK + AL
Sbjct: 179 LIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEAL 221
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/74 (24%), Positives = 39/74 (52%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
+N+ +G+ Q A+++GV P+ + VH + ++A WA+ N+ G + + D ++ C
Sbjct: 157 TNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALWAVANIA-GDSSQLRDYVIKC 215
Query: 183 DILSPYCALLQARD 224
+ L++ D
Sbjct: 216 HGVEALMHLMEKVD 229
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 93.5 bits (222), Expect = 8e-20
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
SN+ AGT QIQ +D+ +L + VL D KCQ EA+WA++NL GGT Q+ AML
Sbjct: 370 SNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKCQFEASWALSNLAQGGTNRQVVAMLED 429
Query: 183 DILSPYC-ALLQARDHRAIIVVLDGLTHLLQAAAKY-DQVRGMCIKLEEIGALDQIENLQ 356
+++ C ALLQ + T +L Y +V + ++EE G LD +E LQ
Sbjct: 430 NVVPALCQALLQTNTDMLNNTLETLYTLMLTVQNGYPHKVDILHDQVEENGGLDSLERLQ 489
Query: 357 QHENEQIYKKSIHILDSYFMEEEDASTQPAHDHEQYQ 467
+ ++EQIY ++ I+ +F ++DA + +H++ Q
Sbjct: 490 ESQSEQIYTQAYRIITQFF-TDDDAGEKESHENADPQ 525
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/103 (29%), Positives = 47/103 (45%)
Frame = +3
Query: 27 PQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCA 206
P I I G+L+ + + L + + Q EAAWA+TN+ G T EQ A + + P
Sbjct: 123 PPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGST-EQTIAAVEAGVTIP--- 178
Query: 207 LLQARDHRAIIVVLDGLTHLLQAAAKYDQVRGMCIKLEEIGAL 335
L+ H++ + L + A Q+R IK + AL
Sbjct: 179 LIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEAL 221
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/74 (24%), Positives = 39/74 (52%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
+N+ +G+ Q A+++GV P+ + VH + ++A WA+ N+ G + + D ++ C
Sbjct: 157 TNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALWAVANIA-GDSSQLRDYVIKC 215
Query: 183 DILSPYCALLQARD 224
+ L++ D
Sbjct: 216 HGVEALMHLMEKVD 229
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 71.3 bits (167), Expect = 4e-13
Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
SN+ I + I SGVL +ARV+ + + ++EAA+ I + C + L+ ++
Sbjct: 346 SNICVEGEQTIDKLISSGVLREVARVMEASEYRSRREAAFVICHCCASANQKHLEYVVEL 405
Query: 183 DILSPYCALLQARDHRAIIVVLDGLTHLLQAAAKY---DQVRGMCIKLEEIGALDQIENL 353
+LS + LL D + +LD + LLQ D + IKLEEIG +++E L
Sbjct: 406 GMLSAFTDLLTCMDVSLVSYILDAIYLLLQFGEMRLLPDNSNPVAIKLEEIGCREKLEFL 465
Query: 354 QQHENEQIYKKSIHILDSYFMEEE 425
+ ++ I+ ++ I+D ++++++
Sbjct: 466 CESQSVDIHARAYTIIDRFYVDDD 489
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 71.3 bits (167), Expect = 4e-13
Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSC 182
SN+ I + I SGVL +ARV+ + + ++EAA+ I + C + L+ ++
Sbjct: 346 SNICVEGEQTIDKLISSGVLREVARVMEASEYRSRREAAFVICHCCASANQKHLEYVVEL 405
Query: 183 DILSPYCALLQARDHRAIIVVLDGLTHLLQAAAKY---DQVRGMCIKLEEIGALDQIENL 353
+LS + LL D + +LD + LLQ D + IKLEEIG +++E L
Sbjct: 406 GMLSAFTDLLTCMDVSLVSYILDAIYLLLQFGEMRLLPDNSNPVAIKLEEIGCREKLEFL 465
Query: 354 QQHENEQIYKKSIHILDSYFMEEE 425
+ ++ I+ ++ I+D ++++++
Sbjct: 466 CESQSVDIHARAYTIIDRFYVDDD 489
>AL132862-27|CAB60564.1| 682|Caenorhabditis elegans Hypothetical
protein Y73F8A.35 protein.
Length = 682
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/104 (18%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = +3
Query: 189 LSPYCALLQARDHRAIIVVLDGLTHLLQAAAKYDQVRGMCIKLEEI--GALDQI-ENLQQ 359
++P + + + + +++LD L H + + M + + ++++ EN +
Sbjct: 173 ITPKVDVSKLQQYDVTVILLDSLAHAQALRSLPRAISYMTSHMSAVVFPYVNKVGENSRS 232
Query: 360 HENEQIYKKSIHILDSYFMEEEDASTQPAHDHEQYQFRTNDAAI 491
+ + KS+ LD +EED + H++ +F+ N+ +I
Sbjct: 233 NGVPLWFGKSLEKLDKSLFDEEDVTVDWTHEYMCNEFKDNETSI 276
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +3
Query: 3 SNVFAGTAPQIQRAIDS--GVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAML 176
SNV AG + +D E + + D + +KE W I NL Q ++
Sbjct: 286 SNVVAGAPRHVDYIMDDPDAFYEWVMAGIHTGDKRLRKECLWIIGNLLATADEHQTYLLV 345
Query: 177 SCDILSPYCALLQARDHR 230
S I+ + ALL D R
Sbjct: 346 SLGIVQHFPALLDFDDVR 363
>Z81117-4|CAB03319.1| 249|Caenorhabditis elegans Hypothetical
protein T06E6.10 protein.
Length = 249
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/48 (29%), Positives = 18/48 (37%)
Frame = +1
Query: 52 AGCWSQSLGSWCIMTSSARRKRPGPLQTCVLEAPLNNWTPCCPVIFCR 195
A C G C+ + K P + CVL PC P+ CR
Sbjct: 38 ASCPDCEPGPECLEKNDCNTKSCAPTEECVLVQVTCIMAPCYPIAECR 85
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/52 (26%), Positives = 20/52 (38%)
Frame = +1
Query: 10 CSREQHHRYRELSTAGCWSQSLGSWCIMTSSARRKRPGPLQTCVLEAPLNNW 165
CS HH +ELS C + + C+ P P C PL ++
Sbjct: 836 CSHRSHHLTQELSDNNCARKEAETLCVPKDHPNSSGP-PQWECCRFCPLRSY 886
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,595,291
Number of Sequences: 27780
Number of extensions: 273102
Number of successful extensions: 870
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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