Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.9  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   2.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 215 GQGSPSHHRSAGWTHSSI 268
           GQ S  HH S  WT   +
Sbjct: 399 GQSSSHHHGSKSWTQEDM 416


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 22/92 (23%), Positives = 33/92 (35%)
 Frame = +3

Query: 84  VHHDIKCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLDGLTH 263
           +  D + + + +WA       G  EQ D  L C  L  +       D  A + V   L H
Sbjct: 25  IKKDCRKESKVSWAALKKMKAGDMEQDDQNLKC-YLKCFMTKHGILDKNAEVDVQKALRH 83

Query: 264 LLQAAAKYDQVRGMCIKLEEIGALDQIENLQQ 359
           L    +  D  + +  K + I   D  E   Q
Sbjct: 84  L--PRSMQDSTKKLFNKCKSIQNEDPCEKAYQ 113


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 233 GSVIPGLEQGAVRRQNITGQHGVQLFRGASKTQVCNG 123
           G  + G++QG    Q   G  GVQ  +G    Q   G
Sbjct: 834 GLGVQGVQQGVQGVQTAQGVQGVQGVQGVQGVQGVQG 870


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/56 (23%), Positives = 22/56 (39%)
 Frame = +3

Query: 12  FAGTAPQIQRAIDSGVLEPIARVLVHHDIKCQKEAAWAITNLCLGGTPEQLDAMLS 179
           F G    ++  I    + PI+ V + + + C    +W    L   G  E L   +S
Sbjct: 25  FGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSIS 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,915
Number of Sequences: 438
Number of extensions: 3622
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)