Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630...    30   0.98 
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225...    30   1.3  
08_02_0974 + 23200053-23200167,23200184-23200665                       29   3.0  
05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453     29   3.0  
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383...    29   3.0  
12_02_0635 - 21430245-21431156                                         28   4.0  
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572...    28   5.2  
08_02_1200 + 25234208-25234370,25238527-25238819,25240003-252402...    27   6.9  
04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964...    27   6.9  
01_02_0098 - 11087875-11089110,11091744-11092022                       27   9.1  

>09_06_0056 -
           20561645-20561920,20562024-20562611,20562698-20563055,
           20563149-20563483,20563593-20563633,20563722-20563932,
           20564289-20564348,20564432-20564457,20565066-20565264
          Length = 697

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -1

Query: 437 KVVWRKEMNGPGFLSFVTLDPVEEGMWHAYGQLYFSS---SKLDLAQTTHH--VLLKWLE 273
           +V+W+     PG L+F  L    +  WH  G  Y  S   S++D A   H+   +  WLE
Sbjct: 610 RVLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVHYNGNMKPWLE 669

Query: 272 I 270
           +
Sbjct: 670 L 670


>06_03_1369 +
           29620958-29621030,29622421-29622452,29622538-29622598,
           29622695-29622711,29622916-29623250,29623329-29623686,
           29623784-29624371,29624664-29624939
          Length = 579

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -1

Query: 449 LEDLKVVWRKEMNGPGFLSFVTLDPVEEGMWHAYGQLYFSS---SKLDLAQTTHH--VLL 285
           + + +++W+     PG L+F  L    +  WH  G  Y  S   S++D A   H+   + 
Sbjct: 488 MNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIERSEIDNAAVIHYNGNMK 547

Query: 284 KWLEI 270
            WLEI
Sbjct: 548 PWLEI 552


>08_02_0974 + 23200053-23200167,23200184-23200665
          Length = 198

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 344 DRKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRGGARYPI 469
           DR R  S  ++GPK +SS  +      ST   +   GAR+ +
Sbjct: 75  DRSRKRSRSQKGPKERSSRKKKSRRDGSTRKKEASEGARFAL 116


>05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453
          Length = 494

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
 Frame = -3

Query: 447 RGSESSVEEGNEWARVSELCDFGPRRGR-----DVARLRSIVLQLKQAGSRP 307
           RG     E+ +EWA    + D GP         D A     +   KQAG RP
Sbjct: 205 RGGGGGGEDIDEWAEACAVFDLGPETAEGSDNADAAAAEGDMRSAKQAGKRP 256


>04_04_1634 +
           34937087-34937198,34937652-34937790,34938263-34938334,
           34938414-34938546,34938591-34938730,34939478-34939585,
           34939650-34939720,34940297-34940545,34940618-34940823,
           34940894-34941026,34941099-34941101,34941136-34941293,
           34941420-34941683,34941869-34942114
          Length = 677

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -1

Query: 434 VVWRKEMNGPGFLSFVTLDPVEEGMWHAYGQLYFSSSKLDLAQTTHHVLLKWL 276
           VV++  M     +S ++L   E G W +  +L++ +  +DLA+  H  + K+L
Sbjct: 375 VVYKGTMKDGPEVSVISLCAFE-GHWTSQHELFYQNKVIDLARLNHENIAKFL 426


>12_02_0635 - 21430245-21431156
          Length = 303

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 379 TPSRK--GCGTLTVNCTSAQASWISPKLPITC 290
           TP R   GC  LT+ C+    S+ SP  P++C
Sbjct: 272 TPPRPYVGCPRLTIPCSCENQSFKSPAKPLSC 303


>04_03_0358 -
           14856490-14856573,14856829-14856874,14857116-14857229,
           14857366-14857401,14857822-14857946,14858052-14858117,
           14858295-14858534,14858900-14859001,14859101-14859138,
           14859219-14859321,14859402-14859524,14860666-14860742,
           14860853-14860998,14861077-14861246
          Length = 489

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 389 VTLD-PVEEGMWHAYGQLYFSSSKLDLAQTTHHVLLKWLEITSQF 258
           V LD P   GM ++  +  +++  L  A   H  LLKW E+  +F
Sbjct: 136 VYLDSPAGVGMSYSLNKSDYTTGDLKTAADAHTFLLKWFELYPEF 180


>08_02_1200 +
           25234208-25234370,25238527-25238819,25240003-25240243,
           25240523-25240855,25240940-25241025,25241133-25242575
          Length = 852

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 366 FLDGVQSHKAQKPGPIHFLPPHYFQILEGGPGTQFAL 476
           F DGV+    +K G +H + P   ++L   PG +  L
Sbjct: 299 FEDGVELPGVEKLGFLHSIVPRLLELLRDSPGDKILL 335


>04_04_1451 +
           33695734-33695806,33695946-33696179,33696341-33696434,
           33696532-33696749,33696859-33696992,33697098-33697325,
           33697417-33697845
          Length = 469

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 364 GCGTLTVNCTSAQASWISPKLPITCY 287
           GCG L ++ + AQ  W++  + + C+
Sbjct: 40  GCGVLALSWSVAQLGWVAGPIAMVCF 65


>01_02_0098 - 11087875-11089110,11091744-11092022
          Length = 504

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 347 RKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRGGARYPIRPIVSRITIHWPS 508
           R  AT+  RR P+SQ+   +A     ++    P  GAR+    + +R++ H PS
Sbjct: 3   RAAATAALRRLPQSQAPRRQARGLQYASPERRPLDGARW---ALYARLSAHLPS 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,683,495
Number of Sequences: 37544
Number of extensions: 264843
Number of successful extensions: 697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)