Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    29   0.32 
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.2  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   9.0  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   9.0  

>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = -1

Query: 392 VKIGAAVREISRNKQTHKQTKIVKNVILVYVYIHMHVVKSGYFNIANTHSN 240
           VKI ++ R+++ N+ T  Q  + KN++L+ + I + V+KS      + HS+
Sbjct: 659 VKILSSYRKVAANRLTPGQLVLPKNLVLLPILI-LAVLKSSAIRSGSIHSD 708


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 308 VYVYIHMHVVKSGYFNIANTHSNFIYMYRCCISVSINY 195
           +Y Y H+H+  S    + + ++ F Y   CC + ++ Y
Sbjct: 37  LYHYEHIHLFTSSQSYMYHPNARFSYSPFCCFTDTLAY 74


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 303 CIYSYACSKKRLFQYCKHTLQFYLYV*ML 217
           C+Y +A  +KR+     H  Q Y  + M+
Sbjct: 192 CLYKFALQRKRILLISSHDDQLYSIIDMI 220


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 150 AIIYSLLTLTSDHILVVNGHTNATSIHINKIGVCVCNIEITAFYYM 287
           A +  +L L S  +LV+NG       H  +IG   C IE +  + M
Sbjct: 223 AKLAKVLLLQSGIVLVLNGTMFLRGKHFERIG---CEIEASVLFIM 265


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -3

Query: 294 SYACSKKRLFQYCKHT 247
           +YAC++K+L ++ +HT
Sbjct: 214 AYACAEKQLLEFVEHT 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,715
Number of Sequences: 5004
Number of extensions: 35334
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)