Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ249344-1|CAB77052.1|  449|Caenorhabditis elegans putative inte...    44   9e-05
AF099913-1|AAC68756.1|  466|Caenorhabditis elegans Paralysed arr...    44   9e-05
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    28   4.7  
U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine rece...    27   6.2  
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    27   8.1  
AC006835-1|AAF40015.2|  903|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AJ249344-1|CAB77052.1|  449|Caenorhabditis elegans putative
           integrin-linked kinase protein.
          Length = 449

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 19/37 (51%), Positives = 29/37 (78%)
 Frame = +1

Query: 1   SWLGYKTRSRDATLSRHKGININELALHTQIAVTPSG 111
           +W G K+R+RDATLSR+ G++++ L L T+IA + SG
Sbjct: 169 TWKGTKSRTRDATLSRYTGVDVSSLNLITKIAESHSG 205


>AF099913-1|AAC68756.1|  466|Caenorhabditis elegans Paralysed arrest
           at two-fold protein4 protein.
          Length = 466

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 19/37 (51%), Positives = 29/37 (78%)
 Frame = +1

Query: 1   SWLGYKTRSRDATLSRHKGININELALHTQIAVTPSG 111
           +W G K+R+RDATLSR+ G++++ L L T+IA + SG
Sbjct: 186 TWKGTKSRTRDATLSRYTGVDVSSLNLITKIAESHSG 222


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 225 IHINKIGVCVCNIEITAFYYMHMNIYIHQNNIFYNFCLFVCLF 353
           +H+  +   V ++      Y+HMN   + N IF  FCL   L+
Sbjct: 116 LHLQFVSAVVLSVHRITSVYLHMNNDKYWNLIFIFFCLGSILY 158


>U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 26 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 204 GHTNATSIHINKIG-VCVCNIEITAFYYMHMNI-YIHQNNIFYNFCLFVCLFVPAN 365
           G   A +  I KI  VC+ +I I ++Y+ ++ +  + +NNIF N    + +F   N
Sbjct: 17  GLAKALTSPIMKINFVCIISIIIISYYFFYLVVKTLIKNNIFSNCTRALLIFCSIN 72


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 270 TAFYYMHMNIYIHQNNIFYNFCLFVCLFVPANLSNGCTDFH**VADDIRIF 422
           T  +Y   NIY++ +    N  LF+C     +L  G +DF   +AD +  F
Sbjct: 171 THIFYREFNIYLYGSIKILNLALFLC-----DLKPGKSDFSKIMADSLIYF 216


>AC006835-1|AAF40015.2|  903|Caenorhabditis elegans Hypothetical
           protein ZK993.2 protein.
          Length = 903

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 316 LFWCMYIFICM**KAVISILQTHTPILFICI-DVALVCPLTTS 191
           +F  +  FIC+  + +IS  + H PIL  C   + L+C   TS
Sbjct: 463 IFKRLLYFICINKENLISDTEDHQPILIDCSHSICLLCVTVTS 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,528,375
Number of Sequences: 27780
Number of extensions: 208006
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)