Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    26   0.20 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   3.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   3.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.7  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -1

Query: 389 KIGAAVREISRNK---QTHKQTKIVKNVILVYVYIHMHVVKSGYFNIANTHSNFIYMYRC 219
           K G   +E SR++   +  K+ KI+ ++   Y Y + +   + Y N  N ++N+   Y+ 
Sbjct: 291 KYGETSKERSRDRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYK- 349

Query: 218 CISVSINY 195
            +  +INY
Sbjct: 350 KLYYNINY 357


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 305 YVYIHMHVVKSGYFNIANTHSNFIYMYRC 219
           YV ++  VV   + NI++TH+N   +Y+C
Sbjct: 445 YVTVNGDVVS--HLNISSTHTNDGGLYKC 471


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 353 KQTHKQTKIVKNVILVYVYIHMHVVKSGYFNIANTHSNFIY 231
           ++T K+ KI+ ++   Y Y + +   + Y N  N + N  Y
Sbjct: 73  RETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 353 KQTHKQTKIVKNVILVYVYIHMHVVKSGYFNIANTHSNFIY 231
           ++T K+ KI+ ++   Y Y + +   + Y N  N + N  Y
Sbjct: 73  RETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNY 113


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 119 HPLPEGVTAIWVCSAN 72
           H +  G+TAIW+   N
Sbjct: 58  HFIESGITAIWLSPIN 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,547
Number of Sequences: 438
Number of extensions: 2722
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)