Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    27   1.7  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    25   5.2  

>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 331 FVCLDDFVVYADDFVEQLLMVSSFVFFALWWRYFSFLES 447
           F CLDDF+ Y   ++   +++ +  F AL + YFS   S
Sbjct: 62  FGCLDDFLRYY--YIAVSVLIEASDFEALAYEYFSIAHS 98


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 301 QLIFVIKCYNIDI*SLHYKKCQPKINKSHLRF 206
           Q +FV  C +    S HYK  +P +N+SH  F
Sbjct: 203 QALFVAPCSH----SYHYKCIRPTLNESHPYF 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,945
Number of Sequences: 5004
Number of extensions: 38621
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)