Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U41553-4|AAA83294.1|  188|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine re...    27   8.1  

>Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical
           protein T03E6.1 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 268 LYC-SI*LRKSVETVHSAF*IIFVCLDDFVVYADDFVEQLLMVSSFVFFALWW 423
           LYC S  L  S+     ++  I VC  +F+   D F   ++ +    FF LW+
Sbjct: 91  LYCGSFALVISLLAAQFSYRFIVVCRPEFLPKLDGFKLVIIFIPCMFFFILWF 143


>U41553-4|AAA83294.1|  188|Caenorhabditis elegans Hypothetical
           protein ZK1193.4 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 301 ETVHSAF*IIFVCLDDFVVYADDFVEQLLMV 393
           E V +AF +   C D F  Y D+F+E+  ++
Sbjct: 12  EHVFTAF-VTATCSDTFTFYVDNFIEEFFVI 41


>AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine
           receptor, class h protein250 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 215 MTFVYFRLTFFIV**LYIYIVAFNYENQL--KLYIVRFKSF 331
           + FV+     FI   L +YIV F Y NQ+     I+ F  F
Sbjct: 243 LQFVFIMTFMFIPCVLLLYIVIFKYHNQILNNFIIILFSCF 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,692,951
Number of Sequences: 27780
Number of extensions: 207128
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)