Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|...    41   1e-04
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.7  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   3.9  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   3.9  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   3.9  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    25   6.8  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   6.8  

>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 271

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 24/102 (23%), Positives = 44/102 (43%)
 Frame = +2

Query: 194 VINRIITYPKWRYYATANLYSKDENHGRTTLDSSEIKMFSKQMSEWWDVNGYLKSLHAMN 373
           ++N++     +         S+  NH   ++  +E+  F++    WWD +G  + LH MN
Sbjct: 3   ILNKVKNVKSYTRLVRQGFLSQQRNH---SVSVNEVDHFNELAKTWWDWDGGSRLLHLMN 59

Query: 374 KVRIPLIRDGLIQTSERTLTPLQDKKILDVGLWGRHLGRGLS 499
             R+  + +       R       KKILD+G  G  L   ++
Sbjct: 60  STRLDFMTEVF-----RERNCFSGKKILDIGCGGGILSESMA 96



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +3

Query: 447 KKFSMLVCGGGILAEGLARLGANVT 521
           KK   + CGGGIL+E +ARLGA+VT
Sbjct: 79  KKILDIGCGGGILSESMARLGASVT 103


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 122  KIMFAKMSTKALNTWRLACYPASPVINRIITYPKWRYYATANLYSKD-----ENHGRTTL 286
            K M + MST +L + RLAC      I  ++ +  W YY  + L   D        GRT +
Sbjct: 4073 KFMSSMMSTVSLPSVRLACQLYGVSIQSLVFF-TWGYYIASVLNCPDIVFHTVLSGRTYI 4131

Query: 287  DSSEIKM 307
            + +E  M
Sbjct: 4132 EGAETVM 4138


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 257 KDENHGRTT-LDSSEIKMFSKQMSEW 331
           K+EN    T LDS ++K F +  S+W
Sbjct: 100 KEENKDAVTRLDSQDVKRFEETYSQW 125


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 447 LSCKGVKVLSDVCMRPSLING 385
           L C  +K+L D   RP++ NG
Sbjct: 128 LHCNDIKILQDCLRRPNISNG 148


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 338 VNGYLKSLHAMNKVRIPLIR--DGLIQTSERTLTPLQDKK 451
           VNGY +S+H   KVR    R   G+I    + L+   +KK
Sbjct: 125 VNGYARSMHNDRKVRASRSRRISGMILAHFKRLSGADEKK 164


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 372 FIACND-FR*PLTSHHSLICFENI-LISEESSVVR 274
           +I C + FR PL+ H  + CF+    ++EE  VV+
Sbjct: 464 YIYCTEPFRIPLSGHLDICCFDKTGTLTEEHMVVQ 498


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +2

Query: 122 KIMFAKMSTKALNTWRLACYPASPVINRIITYPKWRYYATANLYSK 259
           K +  + + K + TWRL+ +P         T+ +   Y T  +  K
Sbjct: 259 KFLVLEENKKIVQTWRLSSWPTGHYAEITFTFDQADSYTTLRMIMK 304


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 406 HTNIGKNLNTFAR*KNSRCWFVGEASW 486
           H  I K +   +    +RCWFV E  W
Sbjct: 447 HFRINKRIRESSLHGINRCWFVMEEEW 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,153
Number of Sequences: 5004
Number of extensions: 46096
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)