Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320E04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 40 0.002
06_02_0017 - 10649527-10651183,10651264-10652363 33 0.11
01_01_0151 - 1346942-1347682 30 1.3
03_06_0374 + 33472391-33472516,33473162-33473365,33473510-334737... 29 3.0
03_06_0369 + 33425251-33425778,33425864-33426051,33426152-334262... 29 3.0
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 28 4.0
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 28 5.2
04_01_0226 + 2842897-2842921,2843049-2843155,2843426-2843494,285... 27 6.9
06_01_0354 - 2550061-2551033,2551125-2551385,2553079-2553274,255... 27 9.1
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 308 FSKQMSEWWDVNGYLKSLHAMNKVRIPLIRDGLIQTSER---TLTPLQDKKILDVGLWGR 478
FS + WD G K LH MN R+ IR L + R + PL+ K++DVG G
Sbjct: 22 FSASGNTAWDSEGPFKPLHLMNPTRLSFIRSTLCRHFRRDPNSSKPLEGLKVIDVGCGGG 81
Query: 479 HLGRGLS 499
L L+
Sbjct: 82 ILSEPLA 88
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 468 CGGGILAEGLARLGANVT 521
CGGGIL+E LAR+GA VT
Sbjct: 78 CGGGILSEPLARMGATVT 95
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 468 CGGGILAEGLARLGANVT 521
C G+L+E LAR+GA VT
Sbjct: 276 CAAGMLSEPLARMGATVT 293
>06_02_0017 - 10649527-10651183,10651264-10652363
Length = 918
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 185 ASPVINRIITY--PKWRYYATANLYSKDENHGRTTLDSSEIKMFSKQMSEWWDVNGYLKS 358
+S +++ + Y P YA + L KD+NHG+ DS E K KQ W+ +
Sbjct: 144 SSVIMSMVFAYIVPSLFTYAVSKLKKKDKNHGKQNKDSGEPKDTEKQ--TWYPDEHKREE 201
Query: 359 LH 364
LH
Sbjct: 202 LH 203
>01_01_0151 - 1346942-1347682
Length = 246
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 235 IVSPFWICDYSVNNWRCRVACKS 167
I PFW CD + +C ACKS
Sbjct: 128 IFPPFWRCDDELEPGKCTAACKS 150
>03_06_0374 +
33472391-33472516,33473162-33473365,33473510-33473706,
33473813-33473942,33474085-33474174
Length = 248
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 116 YFKIMFAKMSTKALNTWRLACYPASPVINRIITYPKW 226
Y + ++T L+ W ACY + N +I Y W
Sbjct: 106 YLHVEDRNITTVGLDNWHKACYVPTSSDNLVIAYRNW 142
>03_06_0369 +
33425251-33425778,33425864-33426051,33426152-33426251,
33426366-33426578,33426616-33426822,33426908-33427095,
33427234-33427492
Length = 560
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 143 STKALNTWRLACYPASPVINRIITYPKW 226
+T L+ W+ ACY + N IIT+ W
Sbjct: 417 ATVGLDNWQKACYVPTSSDNMIITFRNW 444
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +2
Query: 131 FAKMSTKALNTWRLACYPASPVINRIITYPKWRYYATANLYSKDE 265
F ST TWR+ CY +S N I W A Y + E
Sbjct: 113 FKSWSTSVDPTWRVFCYSSSESFNHISPETLWEDLKPAISYLQPE 157
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 143 STKALNTWRLACYPASPVINRIITYPKW 226
+T L+ W ACY + N +IT+ W
Sbjct: 412 ATVGLDNWHKACYVPTSSDNMVITFRNW 439
>04_01_0226 +
2842897-2842921,2843049-2843155,2843426-2843494,
2850676-2852745
Length = 756
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 302 KMFSKQMSEWWDVNGYLKSLHAMNKVRIPLIRDGLIQTSERTLTPLQDKKI 454
++ +K++ W D +G LK A+ KV + L D L+ + R KK+
Sbjct: 674 RLVAKEIINWKDEDGQLKKPDAILKVLLNLWTDFLLYAANRCNRESHAKKL 724
>06_01_0354 -
2550061-2551033,2551125-2551385,2553079-2553274,
2553443-2553632,2553750-2553983
Length = 617
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 206 IITYPKWRYYATANLYSKDENHG 274
I+ +P W +ATA L+ ++ +HG
Sbjct: 297 IVNFPLWFNFATALLFHREGSHG 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,339
Number of Sequences: 37544
Number of extensions: 269507
Number of successful extensions: 590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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