Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-40|CAB16512.1|  268|Caenorhabditis elegans Hypothetical p...    41   5e-04
AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical ...    28   3.5  
AC024788-1|AAF60612.2|  235|Caenorhabditis elegans Hypothetical ...    28   3.5  
AC024830-10|AAF59610.3|  728|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z99281-40|CAB16512.1|  268|Caenorhabditis elegans Hypothetical
           protein Y57G11C.11a protein.
          Length = 268

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 22/76 (28%), Positives = 42/76 (55%)
 Frame = +2

Query: 248 LYSKDENHGRTTLDSSEIKMFSKQMSEWWDVNGYLKSLHAMNKVRIPLIRDGLIQTSERT 427
           L+S       +++D  E++ F    +EW D  G   +LH++N++R+P I D  ++ S++ 
Sbjct: 16  LHSTTSAASVSSIDVKEVEKFGDLSAEWADELGPFHALHSLNRIRVPWIVDN-VRKSDQK 74

Query: 428 LTPLQDKKILDVGLWG 475
             P    +++DVG  G
Sbjct: 75  APP----RLVDVGSGG 86


>AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical
           protein R155.4 protein.
          Length = 873

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 23/97 (23%), Positives = 44/97 (45%)
 Frame = +2

Query: 35  KTMK*FVSEIIYVHSCYGK*SDSSKKVYFKIMFAKMSTKALNTWRLACYPASPVINRIIT 214
           + +K F+S I  + +   K   ++K +++KI  A  +   +       +     +N I T
Sbjct: 198 ENLKDFISSIEMLKTDITK--TTTKTMFYKIQSAITTISDIKVAMFDQFSGDSALNVIKT 255

Query: 215 YPKWRYYATANLYSKDENHGRTTLDSSEIKMFSKQMS 325
              +   +  + YS+ E  G+ T+  S +  FSK MS
Sbjct: 256 SLPF-LSSVYSAYSEHEKIGKKTISDSNLAEFSKSMS 291


>AC024788-1|AAF60612.2|  235|Caenorhabditis elegans Hypothetical
           protein Y46E12A.3 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 383 IPLIR-DGLIQTSERTLTPLQDKKILDVGLWGRHLGRGLS*TRSEC 517
           +PLI  DG    +E+T+  L D K+LD  + G++  +  S   SEC
Sbjct: 139 LPLIYVDGYFLGNEKTIVELNDVKLLD-NILGKYQNQAPSSVCSEC 183


>AC024830-10|AAF59610.3|  728|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.1 protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 200 NRIITYPKWRYYATANLYSKDENHGRTTLDSSEIKMFSKQMSE 328
           +R +++P+W     A+  S D +H    +D+SE K + +QM +
Sbjct: 417 DRHMSFPQWIDLKGADCVSADVHHVVCHVDASEDKQWIRQMHQ 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,130
Number of Sequences: 27780
Number of extensions: 257900
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)