Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   2.2  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   3.9  

>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -2

Query: 214 SIAFFLLTFVITG*--RVRYIIAKSVLRKRIEFFD 116
           +I+ F +T+ +     R+RY + +++LR+ +EFFD
Sbjct: 854 AISNFAMTYAMEAVLQRIRYHLFRTLLRQDVEFFD 888


>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 213  EIWFKDLTLWLNPTAHVVSWTTPLT 287
            ++W +   L LNPT HV     P+T
Sbjct: 984  DLWHRLFDLLLNPTLHVSEENLPMT 1008


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,832
Number of Sequences: 5004
Number of extensions: 21295
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)