Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320E01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    28   0.73 
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   2.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   3.9  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   6.8  

>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 270 ISQVGEKKRTCRNKKNLEKIVIIQTLNHLLEYSTQYIKIC*R 145
           I  + E +  CR K NLEK+V   T+  L   + +    C R
Sbjct: 133 IRSLKEMEEMCREKSNLEKLVADHTIQELARENARLKSECER 174


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 196 TKSFVGILYAVH*NMLKINFS*VFYMLMNMLQYI 95
           ++  +G L   + N++ INFS +F +  N+L+YI
Sbjct: 108 SEPLIGKLLYQNLNLVTINFSNIFSLPANILEYI 141


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -3

Query: 357 VFLTETFLQDTW*THIIMTKFASRLKWCNISQVGEKKRTCRNKKNLEKIVIIQTLNHL-- 184
           +FL ++  +D     +I     + LK     ++G+      NKKN E  +     NHL  
Sbjct: 423 IFLAKSLPEDRGSVPLISYNDKNDLKEYITPKIGDFGLVVENKKNTETALSFLERNHLPN 482

Query: 183 LEYSTQYI 160
           L+  TQ+I
Sbjct: 483 LQDETQHI 490


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = -2

Query: 502 RLGPINLSANLSTKSKKCFNNIHYSRICVNINIHYSRICVQISLFYNVRIPYGNIFTRYM 323
           R+G   ++ N+      C  NI++  +   I    SR C ++ L +++ +   + F    
Sbjct: 538 RIGTDKVADNVVATVCVCGFNIYFPLMSPWIQRFRSRCCFRLGLLFSIFVVGFSSFILAK 597

Query: 322 VNTYY 308
            +TYY
Sbjct: 598 QDTYY 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,673
Number of Sequences: 5004
Number of extensions: 37704
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)