Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320D11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 3.0
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 26 3.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 26 3.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 26 3.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 26 3.0
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 3.9
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 26 3.9
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 5.2
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 6.8
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 6.8
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 6.8
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 9.0
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 9.0
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.0
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 9.0
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.0
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 75 GIDPASKLPQDIIDGKSIPKSKSMYVKSEKSAVKLKIRDGNAVDPASELDEE 230
GI+ +KL + D +SI +++ YV+S + LK D E+DEE
Sbjct: 141 GIEKMAKLYEREHDRRSIAEAEKKYVESAQKITLLKQALKRYHDLHIEIDEE 192
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = -2
Query: 499 VIPVFPTVLSFXSYSAWNLSKAL--SRSFI-FSTLLPPIVVPIRP 374
++ +F +SF ++AW + + R+ I FST LP I++PI P
Sbjct: 120 ILWIFSVAMSF--FTAWVIFSTILTKRAKIEFSTFLPTILLPIVP 162
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = -2
Query: 499 VIPVFPTVLSFXSYSAWNLSKAL--SRSFI-FSTLLPPIVVPIRP 374
++ +F +SF ++AW + + R+ I FST LP I++PI P
Sbjct: 120 ILWIFSVAMSF--FTAWVIFSTILTKRAKIEFSTFLPTILLPIVP 162
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = -2
Query: 499 VIPVFPTVLSFXSYSAWNLSKAL--SRSFI-FSTLLPPIVVPIRP 374
++ +F +SF ++AW + + R+ I FST LP I++PI P
Sbjct: 120 ILWIFSVAMSF--FTAWVIFSTILTKRAKIEFSTFLPTILLPIVP 162
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = -2
Query: 499 VIPVFPTVLSFXSYSAWNLSKAL--SRSFI-FSTLLPPIVVPIRP 374
++ +F +SF ++AW + + R+ I FST LP I++PI P
Sbjct: 120 ILWIFSVAMSF--FTAWVIFSTILTKRAKIEFSTFLPTILLPIVP 162
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 433 LSRSFIFSTLLPPIVVPIRPHERNNQYLFSLL 338
LS + LLP I VP+ PHE + +L SLL
Sbjct: 209 LSCKRAYDELLPRIAVPLLPHEYH--HLHSLL 238
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 340 IKRTDTGCSVRGVGSAQRSAA 402
+K+ DTG +V G A RSAA
Sbjct: 640 LKKADTGIAVEGATDAARSAA 660
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = -2
Query: 184 ILSLTADFSDLTYMLLLLGIDFPSII----SWGSLE 89
I++ +D S + +LL LG+D PS++ WG ++
Sbjct: 580 IVTHPSDVSQIPSLLLSLGVDPPSVVGHESGWGCVQ 615
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 315 YKLQILKHNKENRYWLFRSWG------RIGTTIGGSKVEKMKDLDNALDRFQALYEXKLR 476
+++Q L+ N N +F S + ++ ++ +K ++LDNA+D Q + L
Sbjct: 436 WRIQALRKNINNASTVFNSSNTAESSDNVSRSLSSTERKKRRELDNAIDFLQEVDVEALF 495
Query: 477 TVGKTGITLSR 509
T + + L +
Sbjct: 496 TPATSSLKLPK 506
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 184 ILSLTADFSDLTYMLLLLGIDFPSIISWGS 95
ILS A + + ++GIDF S+IS GS
Sbjct: 871 ILSACAIVTKIREQARIIGIDFMSVISRGS 900
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 339 NKENRYWLFRSWGRIGTTIGGSKVE-KMKDLDNALDRFQA 455
++E+R + +RSW R GG+ + +++ +D D A
Sbjct: 272 HEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSA 311
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Frame = +3
Query: 159 EKSAVKLKIRDGNAVDPASELDEECHVYTDR-YKTTYSVVLSLAD------VVAQK--NS 311
E K K R G ++ D E +Y D +T Y+ +++ A+ + K +
Sbjct: 174 ESEVNKRKTRLGARLEQVMR-DVELEIYKDSPLETLYNQIINYAETDEIRRLTESKLLHM 232
Query: 312 FYKLQILKHNKENRYWLFRSWGRI 383
+ KL IL KE +W R W I
Sbjct: 233 YNKLLILSEIKEKSHWRERIWDLI 256
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 340 IKRTDTGCSVRGVGSAQRSAA 402
+K+ D G +V G A RSAA
Sbjct: 728 LKKADAGIAVEGASDAARSAA 748
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -2
Query: 469 FXSYSAWNLSKALSRSFIFSTLLPPIVV 386
F ++ W++S S +F F L+ P ++
Sbjct: 286 FHDFAYWSISGRCSPAFFFQLLIQPFLI 313
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 421 FIFSTLLPPIVVPIRPHERNN 359
F+ + PP VP+RPH+ N
Sbjct: 151 FVTPRISPPPDVPLRPHKPKN 171
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 24.6 bits (51), Expect = 9.0
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
Frame = +3
Query: 111 IDGKSIPKSKSMYVKSEKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTTYSVVLSLAD 290
I+ S+P +K++ S + +K + P+S +E V DR K + + +
Sbjct: 835 INENSVPFNKNLLPHSLEFILKCSKVKSYDISPSSINSKEAFVCLDRSKESKPIESCFSL 894
Query: 291 VVAQKNSFYKLQILKHNKENRYWLFRSWGRIGTT-IGGSKVEKMKDLDNA 437
+ S Y K+N R W IGG+ E + DL A
Sbjct: 895 SI---QSVYMQSQFKYNNSIRAGETAPWKLANKQFIGGAITENVSDLYTA 941
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,161
Number of Sequences: 5004
Number of extensions: 35043
Number of successful extensions: 134
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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