Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320D11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 45 3e-05
01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179... 34 0.080
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315... 33 0.11
05_01_0265 + 2037518-2037608,2038101-2038348,2038425-2038551,203... 31 0.42
01_06_1462 + 37530509-37530874,37531012-37531099,37531352-375314... 30 1.3
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 29 1.7
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 29 1.7
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 29 1.7
08_01_1056 + 10752363-10752503,10752711-10752771,10753483-107536... 29 2.3
04_01_0105 + 1098551-1100392 29 3.0
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 28 4.0
12_01_0574 - 4697425-4698312 27 6.9
02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055... 27 9.1
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 45.2 bits (102), Expect = 3e-05
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Frame = +3
Query: 132 KSKSMYVKSEKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTTYSVVLSLADVVAQKNS 311
K ++ S+ + +K++ +AV +S L + H+ D K+ Y+ L+++D+ + N
Sbjct: 448 KVEAALESSKGGTMTVKVKGRSAVHESSGLQDTGHILEDG-KSIYNTTLNMSDLTREDNG 506
Query: 312 FYKLQILKHNKENRYWLFRSWGRIGT-TIGGSKVEKMKDLDNALDRFQALYEXK 470
+ ++FR WGR+G IGG+K+E+M + +A+ F+ L+ K
Sbjct: 507 ------------SDCYVFRKWGRVGNEKIGGTKLEEMSKI-HAIQEFRRLFLEK 547
>01_03_0231 +
14014243-14014390,14015053-14015141,14017859-14017949,
14018088-14018215,14018703-14018784,14019022-14019081,
14019160-14019251,14019342-14019462,14019873-14019928,
14020193-14020272,14020774-14020820,14020940-14020989,
14021304-14021366,14021515-14021595,14021703-14021717,
14021875-14021985,14022072-14022147,14022350-14022492,
14022721-14022794,14023364-14023454,14023589-14023687
Length = 598
Score = 33.9 bits (74), Expect = 0.080
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 264 YSVVLSLADVVAQKNSFYKLQILKHNKENRYWLFRSWGRIGT 389
Y ++ +V N FY +Q L+ + + ++ WGR+GT
Sbjct: 157 YDATMNQTNVGGNNNKFYIIQALESDAGGNFMVYSRWGRVGT 198
>01_03_0232 +
14030821-14030904,14031029-14031374,14031475-14031599,
14031927-14032023,14032459-14032691,14032765-14032885,
14033319-14033374,14033630-14033703,14034193-14034239,
14034458-14034507,14034860-14034922,14035160-14035240,
14035517-14035627,14035714-14035789,14036216-14036358,
14036775-14036848,14037304-14037409,14037492-14037547,
14038272-14038378,14041150-14041598
Length = 832
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +3
Query: 264 YSVVLSLADVVAQKNSFYKLQILKHNKENRYWLFRSWGRIGTTIGGSKVEKMKDLDNALD 443
Y ++ +V N FY +Q L+ + + ++ WGR+G G K+
Sbjct: 195 YDATMNQTNVGDNNNKFYIIQALESDAGGSFMVYNRWGRVGAR-GQDKLH-----GPFSS 248
Query: 444 RFQALYEXKLRTVGKT 491
R QA+YE + + GKT
Sbjct: 249 REQAIYEFEGKFHGKT 264
>05_01_0265 +
2037518-2037608,2038101-2038348,2038425-2038551,
2038671-2038944,2038984-2039025,2039026-2039158,
2039256-2039342,2039631-2039762
Length = 377
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1
Query: 422 FHLLDFTAADRCADPTPRTEQPVSV 348
FH L + A R ADPTPR QPV V
Sbjct: 26 FHSLQGSDAYRTADPTPRGPQPVKV 50
>01_06_1462 +
37530509-37530874,37531012-37531099,37531352-37531484,
37531567-37532326
Length = 448
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 228 ECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILKHNK 344
+C++ +R K+TY + L L++VV + + L +H K
Sbjct: 131 QCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRK 169
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 120 KSIPKSKSMYVKSEKSAVKLKIRDGN---AVDPASELDEECHVY 242
K P+ +VK EK+ L + GN AV A E+D++ H Y
Sbjct: 634 KGFPEVALHFVKDEKTRFNLALESGNIQIAVASAKEIDDKDHWY 677
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 120 KSIPKSKSMYVKSEKSAVKLKIRDGN---AVDPASELDEECHVY 242
K P+ +VK EK+ L + GN AV A E+D++ H Y
Sbjct: 634 KGFPEVALHFVKDEKTRFNLALESGNIQIAVASAKEIDDKDHWY 677
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 120 KSIPKSKSMYVKSEKSAVKLKIRDGN---AVDPASELDEECHVY 242
K P+ +VK EK+ L + GN AV A E+D++ H Y
Sbjct: 634 KGFPEVALHFVKDEKTRFNLALESGNIQIAVASAKEIDDKDHWY 677
>08_01_1056 +
10752363-10752503,10752711-10752771,10753483-10753620,
10754667-10754883,10755760-10755861,10756030-10756133,
10756383-10756483,10756563-10756607,10756724-10756855
Length = 346
Score = 29.1 bits (62), Expect = 2.3
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 12/159 (7%)
Frame = +3
Query: 12 PETGTVARSLE-LMKEYNIADWGIDPASKLPQDIIDGKSIPKSKSMYVKSEKSAVKLKIR 188
P+ +A S + MKEYN A D + + I D S+P+S ++ SA++ KI
Sbjct: 110 PDRPAMASSSDPWMKEYNEASRLADDINSM---IADRGSLPQSGPEIIR-HTSAIRRKIT 165
Query: 189 ------DG-----NAVDPASELDEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILK 335
D + + P S D+E H D S +A N + +L
Sbjct: 166 ILCTRLDSLEALLSKIPPKSLSDKELHKRQDTLSNLKSKTKQMATSFNMSNFANREDLLG 225
Query: 336 HNKENRYWLFRSWGRIGTTIGGSKVEKMKDLDNALDRFQ 452
NK+ + R G I G + + MK+ D L++ +
Sbjct: 226 QNKKAADDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLE 264
>04_01_0105 + 1098551-1100392
Length = 613
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -2
Query: 127 IDFPSIISWGSLEAGSIPQSAILYSFINSRDLATVPVSGSI 5
+D P ++SW +L G + Q + +F +R++ + G +
Sbjct: 196 VDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 236
>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 222 DEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILKHNKENRYWLFRSW 374
+E+ H+ T R + +LSL ++ Q YKL+I HN + F SW
Sbjct: 1728 EEQAHIQTLRGRIL-ETILSLRFLIFQYGIVYKLKIASHNTSLAVYGF-SW 1776
>12_01_0574 - 4697425-4698312
Length = 295
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -1
Query: 395 DRCADPTPRTEQPVSVLFIMFQDLQFVERVLLSDNISEREHDRVRCFVAV 246
DR A P P T + L QDL +VL +ER D RC++AV
Sbjct: 100 DRRA-PAPATTAATAGLRGRLQDLTAGVQVLRRQVSAERRGDAARCYLAV 148
>02_05_1231 -
35104832-35105002,35105104-35105167,35105267-35105557,
35105755-35105999,35106410-35106489,35106890-35107006,
35107150-35108002,35108081-35108161
Length = 633
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 127 IDFPSIISWGSLEAGSIPQSAILYSFINSRDLATVPVSGS 8
+D+P + W + E + Q+ + ++ NS LA VP+S S
Sbjct: 486 VDYP--VEWSTQETSASSQAIVPFADPNSLALANVPLSRS 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,479,538
Number of Sequences: 37544
Number of extensions: 222295
Number of successful extensions: 700
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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