Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320D11f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 87 9e-18
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 87 9e-18
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 45 4e-05
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 45 4e-05
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 45 4e-05
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 30 0.87
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 29 1.5
AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical ... 29 1.5
AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical ... 29 2.0
Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 29 2.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.7
AL034393-22|CAD36499.1| 655|Caenorhabditis elegans Hypothetical... 29 2.7
AL034393-21|CAA22320.2| 681|Caenorhabditis elegans Hypothetical... 29 2.7
AF497833-1|AAM18111.1| 655|Caenorhabditis elegans putative Na-H... 29 2.7
AF497832-1|AAM18110.1| 681|Caenorhabditis elegans putative Na-H... 29 2.7
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 29 2.7
Z81553-12|CAB04498.3| 803|Caenorhabditis elegans Hypothetical p... 28 3.5
Z81553-7|CAB04496.4| 797|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81492-9|CAB04026.2| 805|Caenorhabditis elegans Hypothetical pr... 28 3.5
U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical pr... 28 3.5
U00049-6|AAM22030.1| 711|Caenorhabditis elegans Hypothetical pr... 28 3.5
AC006769-9|AAF60585.2| 779|Caenorhabditis elegans Hypothetical ... 28 3.5
AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical ... 28 3.5
Z81581-8|CAB04661.2| 244|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 27 6.2
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 27 6.2
Z83105-4|CAB05486.1| 280|Caenorhabditis elegans Hypothetical pr... 27 8.1
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 27 8.1
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 27 8.1
AF078784-3|AAY86249.1| 254|Caenorhabditis elegans Hypothetical ... 27 8.1
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 86.6 bits (205), Expect = 9e-18
Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +3
Query: 183 IRDGNAVDPASELDEECHVYTDRYK-TTYSVVLSLADVVAQKNSFYKLQILKHNKENRYW 359
I+ G VD L + CHV+ + + Y LS D+ KNS+YK+Q+LK ++ Y+
Sbjct: 449 IKKGTVVDAKFALADRCHVFKNEIDGSLYQATLSFTDLTQNKNSYYKIQLLKDDQRENYY 508
Query: 360 LFRSWGRIGTTIGGSKVEKMKDLDNALDRFQALYEXKLR 476
+FRSWGR+GT +GG+K E + + A+ +FQ ++ K +
Sbjct: 509 VFRSWGRVGTEVGGNKHESYSNSNEAILKFQDVFHEKTK 547
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans
Poly(adp-ribose) metabolism enzymeprotein 1 protein.
Length = 945
Score = 86.6 bits (205), Expect = 9e-18
Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +3
Query: 183 IRDGNAVDPASELDEECHVYTDRYK-TTYSVVLSLADVVAQKNSFYKLQILKHNKENRYW 359
I+ G VD L + CHV+ + + Y LS D+ KNS+YK+Q+LK ++ Y+
Sbjct: 449 IKKGTVVDAKFALADRCHVFKNEIDGSLYQATLSFTDLTQNKNSYYKIQLLKDDQRENYY 508
Query: 360 LFRSWGRIGTTIGGSKVEKMKDLDNALDRFQALYEXKLR 476
+FRSWGR+GT +GG+K E + + A+ +FQ ++ K +
Sbjct: 509 VFRSWGRVGTEVGGNKHESYSNSNEAILKFQDVFHEKTK 547
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +3
Query: 240 YTDRYKTTYSVVLSLADVVAQK---NSFYKLQILKHNKENRYWLFRSWGRIGTTIGGSKV 410
+ D + + V+++ D++ + ++FY++QI+K + LF +WGRIG+ +G +
Sbjct: 1754 FCDETQQYFDVLMNKTDLMYGRCGFHNFYRMQIIKRRDAELFILFTNWGRIGSGMGEFQT 1813
Query: 411 EKMKDLDNALDRFQALYEXK 470
L+ A F+++++ K
Sbjct: 1814 TPFNSLELAAKEFKSIFKSK 1833
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +3
Query: 240 YTDRYKTTYSVVLSLADVVAQK---NSFYKLQILKHNKENRYWLFRSWGRIGTTIGGSKV 410
+ D + + V+++ D++ + ++FY++QI+K + LF +WGRIG+ +G +
Sbjct: 1792 FCDETQQYFDVLMNKTDLMYGRCGFHNFYRMQIIKRRDAELFILFTNWGRIGSGMGEFQT 1851
Query: 411 EKMKDLDNALDRFQALYEXK 470
L+ A F+++++ K
Sbjct: 1852 TPFNSLELAAKEFKSIFKSK 1871
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = +3
Query: 240 YTDRYKTTYSVVLSLADVVAQK---NSFYKLQILKHNKENRYWLFRSWGRIGTTIGGSKV 410
+ D + + V+++ D++ + ++FY++QI+K + LF +WGRIG+ +G +
Sbjct: 1754 FCDETQQYFDVLMNKTDLMYGRCGFHNFYRMQIIKRRDAELFILFTNWGRIGSGMGEFQT 1813
Query: 411 EKMKDLDNALDRFQALYEXK 470
L+ A F+++++ K
Sbjct: 1814 TPFNSLELAAKEFKSIFKSK 1833
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 30.3 bits (65), Expect = 0.87
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -2
Query: 484 PTVLSFXSYSAWNLSKALSRSFIFSTLLPPIVVPIR 377
P LS SYS WN L F TL P V R
Sbjct: 251 PITLSVGSYSPWNSQNTLFHKSAFHTLFLPTTVSFR 286
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -1
Query: 404 TAADRCAD-PTPRTEQPVSVLFIMFQDLQFVERVLLSDNISEREHDRVRCFVAVRVHVAL 228
T +D C + P P + P I+F DL ++ + + H+ + CF + ++ L
Sbjct: 817 TTSDNCEEIPDPSSIDPNKKTLIIFDDLMLEKQNKIEQYYTRGRHNNIDCFYISQNYIKL 876
>AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical
protein Y40C7B.1 protein.
Length = 916
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -1
Query: 404 TAADRCAD-PTPRTEQPVSVLFIMFQDLQFVERVLLSDNISEREHDRVRCFVAVRVHVAL 228
T ++ C D P P + P I+F DL ++ + + H+ + CF + ++ L
Sbjct: 781 TTSENCEDIPDPSSIDPNKKTLIIFDDLMLEKQNKIEQYYTRGRHNNIDCFYISQNYIKL 840
>AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical
protein ZK105.3 protein.
Length = 802
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 484 PTVLSFXSYSAWNLSKALSRSFIFSTLLPPIVVPIR 377
P LS +YS WN L F TL P V R
Sbjct: 254 PITLSVGTYSPWNSQNTLFHKSAFHTLFLPTTVSFR 289
>Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 159 EKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILKH 338
E+S +K + +G+++ ELDE ++ +D + TYS+V + + N + + K
Sbjct: 726 ERSPMKKENTNGSSMH--DELDENDYLKSDIHPGTYSLVAVVCHLGDSPNKGHYVAYTKE 783
Query: 339 NKENRYWL 362
+N WL
Sbjct: 784 LYKNSSWL 791
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 102 QDIIDGKSIPKSKSMYVKSEKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTT 263
+D+ + + +PK K++ K+EKS + + N + PA + + TD+ K T
Sbjct: 12855 KDVSEIEEVPKKKTIKKKTEKSDSSIS-QKSNVLKPADDDKSKSDDVTDKSKKT 12907
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 102 QDIIDGKSIPKSKSMYVKSEKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTT 263
+D+ + + +PK K++ K+EKS + + N + PA + + TD+ K T
Sbjct: 12855 KDVSEIEEVPKKKTIKKKTEKSDSSIS-QKSNVLKPADDDKSKSDDVTDKSKKT 12907
>AL034393-22|CAD36499.1| 655|Caenorhabditis elegans Hypothetical
protein Y18D10A.6b protein.
Length = 655
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 472 SFXSYSA--WNLSKALSRSFIFSTLLPPIVVPIRPHERNNQYLFS 344
S SYS W+ +ALS F LLPPI+ + N Y FS
Sbjct: 126 SILSYSRRDWSEIEALSPDVFFLVLLPPIIFE-NAYNLNKGYFFS 169
>AL034393-21|CAA22320.2| 681|Caenorhabditis elegans Hypothetical
protein Y18D10A.6a protein.
Length = 681
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 472 SFXSYSA--WNLSKALSRSFIFSTLLPPIVVPIRPHERNNQYLFS 344
S SYS W+ +ALS F LLPPI+ + N Y FS
Sbjct: 152 SILSYSRRDWSEIEALSPDVFFLVLLPPIIFE-NAYNLNKGYFFS 195
>AF497833-1|AAM18111.1| 655|Caenorhabditis elegans putative Na-H
exchanger isoform 8b protein.
Length = 655
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 472 SFXSYSA--WNLSKALSRSFIFSTLLPPIVVPIRPHERNNQYLFS 344
S SYS W+ +ALS F LLPPI+ + N Y FS
Sbjct: 126 SILSYSRRDWSEIEALSPDVFFLVLLPPIIFE-NAYNLNKGYFFS 169
>AF497832-1|AAM18110.1| 681|Caenorhabditis elegans putative Na-H
exchanger isoform 8a protein.
Length = 681
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 472 SFXSYSA--WNLSKALSRSFIFSTLLPPIVVPIRPHERNNQYLFS 344
S SYS W+ +ALS F LLPPI+ + N Y FS
Sbjct: 152 SILSYSRRDWSEIEALSPDVFFLVLLPPIIFE-NAYNLNKGYFFS 195
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 159 EKSAVKLKIRDGNAVDPASELDEECHVYTDRYKTTYSVVLSLADVVAQKNSFYKLQILKH 338
E+S +K + +G+++ ELDE ++ +D + TYS+V + + N + + K
Sbjct: 726 ERSPMKKENTNGSSMH--DELDENDYLKSDIHPGTYSLVAVVCHLGDSPNKGHYVAYTKE 783
Query: 339 NKENRYWL 362
+N WL
Sbjct: 784 LYKNSSWL 791
>Z81553-12|CAB04498.3| 803|Caenorhabditis elegans Hypothetical
protein F56H6.9 protein.
Length = 803
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -2
Query: 484 PTVLSFXSYSAWNLSKALSRSFIFSTLLPPIVVPIR 377
P LS +YS WN L F T+ P V R
Sbjct: 262 PITLSVGTYSPWNSQNTLFHKSAFHTMFLPTTVSFR 297
>Z81553-7|CAB04496.4| 797|Caenorhabditis elegans Hypothetical
protein F56H6.7 protein.
Length = 797
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -2
Query: 484 PTVLSFXSYSAWNLSKALSRSFIFSTLLPPIVVPIR 377
P LS +YS WN L F T+ P V R
Sbjct: 262 PITLSVGTYSPWNSQNTLFHKSAFHTMFLPTTVSFR 297
>Z81492-9|CAB04026.2| 805|Caenorhabditis elegans Hypothetical
protein E03H4.4 protein.
Length = 805
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -2
Query: 484 PTVLSFXSYSAWNLSKALSRSFIFSTLLPPIVVPIR 377
P LS +YS WN L F T+ P V R
Sbjct: 266 PITLSVGTYSPWNSQNTLFHKSAFHTMFLPTTVSFR 301
>U80025-2|AAD32270.3| 806|Caenorhabditis elegans Hypothetical
protein F02C9.2 protein.
Length = 806
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -2
Query: 484 PTVLSFXSYSAWNLSKALSRSFIFSTLLPPIVVPIR 377
P LS +YS WN + F TL P V R
Sbjct: 265 PITLSVGTYSPWNSQNTMFHKSAFHTLFLPTTVSFR 300
>U00049-6|AAM22030.1| 711|Caenorhabditis elegans Hypothetical
protein C18F10.2 protein.
Length = 711
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 487 FPTVLSFXSYSAWNLSKALSRSFIFSTLLPPI 392
F L F + SA+N+S +RSF+F +L P+
Sbjct: 5 FQHFLLFYAASAYNVSVNTNRSFLFGDVLEPL 36
>AC006769-9|AAF60585.2| 779|Caenorhabditis elegans Hypothetical
protein Y45G12C.11 protein.
Length = 779
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -2
Query: 484 PTVLSFXSYSAWNLSKALSRSFIFSTLLPPIVVPIR 377
P LS +YS WN + F TL P V R
Sbjct: 242 PITLSVGTYSPWNSQNTMFHKSAFHTLFLPTTVSFR 277
>AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical
protein F56A4.6 protein.
Length = 796
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -2
Query: 484 PTVLSFXSYSAWNLSKALSRSFIFSTLLPPIVVPIR 377
P LS +YS WN + F TL P V R
Sbjct: 259 PITLSVGTYSPWNSQNTMFHKSAFHTLFLPTTVSFR 294
>Z81581-8|CAB04661.2| 244|Caenorhabditis elegans Hypothetical
protein T02E1.6 protein.
Length = 244
Score = 27.9 bits (59), Expect = 4.7
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 90 SKLPQDIIDGKSIPKSKSMYVKSEKSAVKLKIRDG---NAVDPASELDEECHVYT-DRYK 257
S P + G S PKS+S+ VK E+ K R+G N S+L + + R+K
Sbjct: 7 SSKPISVTKGLSPPKSRSLKVKREREKSPTKGRNGSMQNKPTDTSDLAIDATQWEFSRFK 66
Query: 258 TTYSVVLSLADVVAQKNS 311
V D+V KN+
Sbjct: 67 DEVGTVFEDPDIV-MKNT 83
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 156 SEKSAVKLKIRDGNAVDPASELDEECH-VYTDRYKTTYSVVLSLADVVAQKNSFYKLQIL 332
++K + K+ + V S + H V++ YKTT V +L + +N+ LQI
Sbjct: 7 NDKISYKVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDENTVVHLQIW 66
Query: 333 KHNKENRY 356
+ ++RY
Sbjct: 67 DISGQDRY 74
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 156 SEKSAVKLKIRDGNAVDPASELDEECH-VYTDRYKTTYSVVLSLADVVAQKNSFYKLQIL 332
++K + K+ + V S + H V++ YKTT V +L + +N+ LQI
Sbjct: 7 NDKISYKVLVIGDPGVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDENTVVHLQIW 66
Query: 333 KHNKENRY 356
+ ++RY
Sbjct: 67 DISGQDRY 74
>Z83105-4|CAB05486.1| 280|Caenorhabditis elegans Hypothetical
protein F14H3.4 protein.
Length = 280
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 225 EECHVYTDRYKTTYSVVLSLADVVAQKNSFY--KLQILKHNKENRYWLFRSWGRI 383
+EC +Y+T Y VLS QK Y +LQ L+H++ F+ R+
Sbjct: 112 DECETRLKQYRTDYERVLSQRKPSIQKIQQYEAELQQLQHDRRTHEAAFQLLRRV 166
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 27.1 bits (57), Expect = 8.1
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Frame = +3
Query: 3 SIDPETGTVARSLELMKEYNIADWGIDPASKLPQDIIDGKSIPKSKSMYVKSEKSAVKLK 182
S D TG V L + I W DP ++ P+DI SI + + +K + K
Sbjct: 849 SSDDTTGMV-HFLTQARNGTITLWESDPENRTPRDIASVPSIVPFRRFLILHDKMILVTK 907
Query: 183 -------IRDGNAVDPASELDEECHVYTDRYKT 260
+ V+ A+EL+ H+ RY T
Sbjct: 908 NNHIVQTDKKLKVVNVATELERVDHILPLRYAT 940
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 27.1 bits (57), Expect = 8.1
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Frame = +3
Query: 3 SIDPETGTVARSLELMKEYNIADWGIDPASKLPQDIIDGKSIPKSKSMYVKSEKSAVKLK 182
S D TG V L + I W DP ++ P+DI SI + + +K + K
Sbjct: 849 SSDDTTGMV-HFLTQARNGTITLWESDPENRTPRDIASVPSIVPFRRFLILHDKMILVTK 907
Query: 183 -------IRDGNAVDPASELDEECHVYTDRYKT 260
+ V+ A+EL+ H+ RY T
Sbjct: 908 NNHIVQTDKKLKVVNVATELERVDHILPLRYAT 940
>AF078784-3|AAY86249.1| 254|Caenorhabditis elegans Hypothetical
protein H34I24.3 protein.
Length = 254
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 366 RSWGRIGTTIGGSKVEKMKDLDNALDRFQALYEXKL 473
R+ R+G +GGS++E+ +D ++ A Y+ +
Sbjct: 126 RALSRLGHRVGGSRIEQSEDFLKTVENLIARYKGNI 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,574,438
Number of Sequences: 27780
Number of extensions: 191050
Number of successful extensions: 611
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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