Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320D08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29082-8|AAA68405.1|  228|Caenorhabditis elegans Sex muscle abno...    27   6.2  
S88446-1|AAB21850.1|  228|Caenorhabditis elegans sem-5 protein.        27   6.2  
AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical ...    27   6.2  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    27   8.1  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    27   8.1  

>U29082-8|AAA68405.1|  228|Caenorhabditis elegans Sex muscle
           abnormal protein 5 protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 501 FNSSHAISAPHRAASVSLTSNISLTIYNKHT 409
           FNS + + A HR ASVS T  I L+  N  T
Sbjct: 126 FNSLNELVAYHRTASVSRTHTILLSDMNVET 156


>S88446-1|AAB21850.1|  228|Caenorhabditis elegans sem-5 protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 501 FNSSHAISAPHRAASVSLTSNISLTIYNKHT 409
           FNS + + A HR ASVS T  I L+  N  T
Sbjct: 126 FNSLNELVAYHRTASVSRTHTILLSDMNVET 156


>AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical
           protein C52E2.4 protein.
          Length = 658

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 462 ASVSLTSNISLTIYNKHTISTRIELEKKQNRNDIKCRVRRGGSRLSRNEAQYK 304
           A+ S  + +SL +   H +  R+E E+  NR+ I  R +   ++L    AQYK
Sbjct: 11  ANESTLTVLSLRLAFNHFVELRLEFEEYPNRSTIIYRYKEDDTQLEL--AQYK 61


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin receptor
            protein 2 protein.
          Length = 1338

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 404  DIVCLL*IVKLMLEVNDTEAARWGALMAW 490
            +I+ LL  +K++L V   +  +WG ++ W
Sbjct: 1055 NIIFLLIALKVVLSVQSRDRTKWGRIIGW 1083


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
            protein LAT-2 protein.
          Length = 1338

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 404  DIVCLL*IVKLMLEVNDTEAARWGALMAW 490
            +I+ LL  +K++L V   +  +WG ++ W
Sbjct: 1055 NIIFLLIALKVVLSVQSRDRTKWGRIIGW 1083


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,466,807
Number of Sequences: 27780
Number of extensions: 131276
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)