Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320D07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   5.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = -2

Query: 502 LQILFPVENNSFRLNFSVFNIHFVSAQDNRDTFTYTDQISMPVRYIFVRNSRGYVEHDDS 323
           LQ +   E N +  N  + N+ F   Q      T T Q +M +  +   +S+  V  DD+
Sbjct: 355 LQPVCQNEMNKWWWNMKISNLSF-DKQSLLKENTVTCQEAMHM--LKNADSQLLVISDDN 411

Query: 322 TLSLNIVSVSKTTKLLLSGCV 260
                ++S++K T  ++SG V
Sbjct: 412 IHIKGVISLNKLTSYVISGIV 432


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +2

Query: 137  TTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK 280
            T F  RH     +        +++  L  +T +G +++ +W   G+EK
Sbjct: 984  TPFEHRHFISGIDSNLHVYAPLKIS-LDVNTPKGNMQWKIWPMKGEEK 1030


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = +2

Query: 362 KNVPNWHRDLVRVCEGIPIVLCGNKVDIK 448
           K++ +W  ++  + +G P++   N +D++
Sbjct: 379 KSLEDWENEMNIITKGKPLIRVENIIDLE 407


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 371 PNWHRDLVRVCEGIPIV 421
           PNW  + V+ C+G+  V
Sbjct: 107 PNWSYNDVKYCDGLTSV 123


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 303 YPSLRPPNFSC 271
           YP +R P+F C
Sbjct: 112 YPGMRAPSFRC 122


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 303 YPSLRPPNFSC 271
           YP +R P+F C
Sbjct: 112 YPGMRAPSFRC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,691
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)