Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320D04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0074 - 14336430-14338268                                         28   5.2  
06_03_1478 - 30420097-30420651                                         27   6.9  
04_04_1526 - 34163154-34163288,34163751-34163815,34164444-341645...    27   9.1  

>09_04_0074 - 14336430-14338268
          Length = 612

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 61  QNSVEHWNKLVIVYTLHGQ 117
           + SV  WN ++I Y LHGQ
Sbjct: 382 EKSVPSWNSMIIGYGLHGQ 400


>06_03_1478 - 30420097-30420651
          Length = 184

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 117 AAANYRRRHIGLGCSDERLSLYPYSAADRH 206
           A A++R +   +  +DER   YP    DRH
Sbjct: 35  AVASWREKLADMAAADERAGRYPCPLCDRH 64


>04_04_1526 -
           34163154-34163288,34163751-34163815,34164444-34164516,
           34164593-34164721
          Length = 133

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 87  ISNSLYTTRSAAANYRRRHIGLGCSDERLSLYPYSAADRHATCNRQMKK 233
           +  S+ +  +A A Y  RH+     D+RL+    S  D H   + ++KK
Sbjct: 55  VGTSIASVLTAWAGYSLRHMQQSRIDKRLNSIEQSLKDTHKVEHEEIKK 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,815,980
Number of Sequences: 37544
Number of extensions: 206363
Number of successful extensions: 316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)