Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320D03f
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   1.5  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    27   1.5  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    26   1.9  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   4.5  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    24   7.8  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    24   7.8  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 404 FFFFFLVSTKHLFTKILRHTRKTRLFGTLNSYIMFLNIELI 282
           +FFFF     ++   ++ H+R+++L   + S   FL + ++
Sbjct: 264 WFFFFFSFPSYIIKYLMSHSRRSKLLSAVFSKKSFLIVSVL 304


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 404 FFFFFLVSTKHLFTKILRHTRKTRLFGTLNSYIMFLNIELIFCS 273
           F  FF     +L + IL+H +K RL   ++ Y + L I L+ CS
Sbjct: 215 FGIFFGCVIGYLLSFILKHAQKYRLIDAISYYSLPLAIPLL-CS 257


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +1

Query: 70  YKYIVQS-KKGLKTRWICSSHHN 135
           Y+ I++S ++G+ +RWIC  H N
Sbjct: 371 YQTILKSPRQGICSRWICDLHEN 393


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 244 IRK*LRYYLIEQKINSIFKNII*ELSVPNRRVFLVCLNIFVNK 372
           +RK    YLI QK+N    +++  LS   R   L   N F  K
Sbjct: 89  LRKGKDVYLISQKLNQEAASVVKYLSTQGRARVLEVFNAFDKK 131


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 43  GTRNLIYSGYKYIVQSKKGLKTRW 114
           G R +    YK I   K+G+KT W
Sbjct: 470 GQRAIRKGNYKAIYVPKEGIKTEW 493


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 93  LRLYYVFVTRVDKVSCTAAG 34
           +RLY VF  +  +V C +AG
Sbjct: 382 IRLYNVFADQTQEVDCISAG 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,358
Number of Sequences: 5004
Number of extensions: 30486
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)