Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320D03f
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135           28   2.4  
10_02_0152 - 5902554-5903058,5904171-5904670                           27   7.5  

>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
          Length = 485

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 88  SKKGLKTRWICSSH 129
           S++G KT W+CSSH
Sbjct: 416 SRRGFKTLWLCSSH 429


>10_02_0152 - 5902554-5903058,5904171-5904670
          Length = 334

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/17 (52%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -3

Query: 49 VYRG-WFQGRWVPAVLA 2
          +YRG WF  +W+PA++A
Sbjct: 35 LYRGGWFPEKWLPAIMA 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,513,743
Number of Sequences: 37544
Number of extensions: 167730
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)