Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320D03f
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        27   6.8  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    27   6.8  
AL132848-2|CAB60385.2|  333|Caenorhabditis elegans Hypothetical ...    26   9.0  

>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
 Frame = +1

Query: 19  PIFLETSRG------TRNLIYSGY------KYIVQSKKGLKTRWICSSHHNRGCRA 150
           PI +ETSRG       RNL  S Y      +Y + + K     W CS+H  R C A
Sbjct: 113 PIVIETSRGFNVTVQLRNLCSSNYHGKRCNRYCIANAK---LHWECSTHGVRRCSA 165


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
 Frame = +1

Query: 19  PIFLETSRG------TRNLIYSGY------KYIVQSKKGLKTRWICSSHHNRGCRA 150
           PI +ETSRG       RNL  S Y      +Y + + K     W CS+H  R C A
Sbjct: 113 PIVIETSRGFNVTVQLRNLCSSNYHGKRCNRYCIANAK---LHWECSTHGVRRCSA 165


>AL132848-2|CAB60385.2|  333|Caenorhabditis elegans Hypothetical
           protein Y47H10A.3 protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 150 GSTTAIVMRG--TNPPSFQPLLRLYYVFVTRVDKVSCTAA 37
           GS T +  R   T PP+  P   +YYV   + D++  TAA
Sbjct: 220 GSRTGLYERDPKTMPPNSWPPFSVYYVQKLKRDRIPSTAA 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,758,943
Number of Sequences: 27780
Number of extensions: 164545
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)