Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320D02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    28   0.97 
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   1.7  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   3.0  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   5.2  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.0  

>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
 Frame = +1

Query: 241 EGGCGACTVM--VSKYNRQENKIIHLAVNACLAPVCAMHGLAVTTVEGIGSTKTKLHPVQ 414
           +G C  C+ +    +  RQENKI HL+ +A L  + +      ++   I   +     V+
Sbjct: 147 KGMCDYCSPLEPYDESYRQENKIKHLSFHAYLRKINSNVNKYASSQSFIPPLEEPSFTVK 206

Query: 415 ERIAKAH----GSQCGFCTPGIVMSMYTLLRSCKNIQYS 519
           E+    H       C  C P  VM      R   +I+++
Sbjct: 207 EKCPSGHPPWPAGICTKCQPSTVMLNLQPFRVIDHIEFA 245


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 218 RAQN*VVRKVDVVLALLWSPNITDKKIKLFIWQ*MLVSHQY 340
           R  N  V  +   ++++  PNI   +I LF+WQ +L + ++
Sbjct: 405 RLLNAPVSAISAYISIVQKPNIAFPEIILFLWQAILYNKRF 445


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 257 APHPPSAQPNFVPVSRSFF-RKYHNNVHSGSGLDSITF 147
           AP+PPS  P +   + S   R  H++ H+ S + +  F
Sbjct: 564 APNPPSVMPTYARKTSSHSERSSHSSYHNSSHVPTAAF 601


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 458 VQKPHCDPWALAILS*TGCSL 396
           V + + D WA+A+++ TGC+L
Sbjct: 54  VFRENFDTWAMAVVNRTGCAL 74


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -1

Query: 446 HCDPWALAILS*TGCSLVLVDPIPSTVVTAKPCIAHTGARQAFTAR*IILFSCRLYLETI 267
           H   WA+ IL   G +L++VD I     +A+       + Q  T   I  +  +L  +T+
Sbjct: 445 HAAEWAVGILLRNGDTLIIVDVIECDDPSARAVKDRMESEQLETLEKITKYILKLLSKTV 504


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 251 HPPSAQPNFVPVSRSFFRKYHNNVHSGSGL 162
           HP ++ P FVP S        NN H  S +
Sbjct: 66  HPSASAPIFVPTSSVQLNVSKNNGHKASDI 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,405
Number of Sequences: 5004
Number of extensions: 51354
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)