Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320D02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 113 8e-26
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 112 2e-25
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 111 3e-25
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 111 3e-25
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659... 107 4e-24
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 97 8e-21
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 37 0.011
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264... 29 3.0
05_05_0196 + 23152389-23152658,23153042-23153092,23153167-231532... 28 4.0
08_02_0937 + 22801526-22802461 27 6.9
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 27 9.1
06_03_0854 + 25400855-25403741,25406174-25407708 27 9.1
>03_04_0157 +
17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 113 bits (272), Expect = 8e-26
Identities = 64/140 (45%), Positives = 79/140 (56%), Gaps = 14/140 (10%)
Frame = +1
Query: 121 ELVFYVNGKKVIESSPDPEWTLLWYXXXXXXXXXXXXXCAEGGCGACTVMVSKYNRQENK 300
E V YVNG + + TLL Y C EGGCGACTVMVS Y++ K
Sbjct: 21 EAVVYVNGVRRVLPDGLAHLTLLQYLRDIGLPGTKLG-CGEGGCGACTVMVSCYDQTTKK 79
Query: 301 IIHLAVNACLAPVCAMHGLAVTTVEGIGSTKTKLHPV--------------QERIAKAHG 438
H A+NACLAP+ ++ G+ + TVEGIG+ + + +ER+A AHG
Sbjct: 80 TQHFAINACLAPLYSVEGMHIITVEGIGNRQRAVWNYLCDEVVTCWLKTLRKERLAMAHG 139
Query: 439 SQCGFCTPGIVMSMYTLLRS 498
SQCGFCTPG VMSMY LLRS
Sbjct: 140 SQCGFCTPGFVMSMYALLRS 159
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 112 bits (269), Expect = 2e-25
Identities = 51/122 (41%), Positives = 74/122 (60%)
Frame = +1
Query: 127 VFYVNGKKVIESSPDPEWTLLWYXXXXXXXXXXXXXCAEGGCGACTVMVSKYNRQENKII 306
V VNG++ DP TLL + C EGGCGAC V+VSKY+ +++
Sbjct: 7 VVAVNGERYEAVGVDPSMTLLEFLRTRTPFRGPKLGCGEGGCGACAVVVSKYDAAADEVT 66
Query: 307 HLAVNACLAPVCAMHGLAVTTVEGIGSTKTKLHPVQERIAKAHGSQCGFCTPGIVMSMYT 486
+ ++CL + ++H AVTT EGIG+++ HPVQ R+A H SQCGFCTPG+ +S+++
Sbjct: 67 SFSASSCLTLLGSLHHCAVTTSEGIGNSRDGFHPVQRRLAGFHASQCGFCTPGMCVSIFS 126
Query: 487 LL 492
L
Sbjct: 127 AL 128
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 111 bits (267), Expect = 3e-25
Identities = 51/125 (40%), Positives = 75/125 (60%)
Frame = +1
Query: 118 KELVFYVNGKKVIESSPDPEWTLLWYXXXXXXXXXXXXXCAEGGCGACTVMVSKYNRQEN 297
+ +V VNG++ DP TLL + C EGGCGAC V+VSKY+ +
Sbjct: 9 RPVVVTVNGERYEAVGVDPSTTLLEFLRTRTPVRGPKLGCGEGGCGACVVVVSKYDAVAD 68
Query: 298 KIIHLAVNACLAPVCAMHGLAVTTVEGIGSTKTKLHPVQERIAKAHGSQCGFCTPGIVMS 477
++ + ++CL + ++H AVTT EGIG+++ H VQ R++ H SQCGFCTPG+ MS
Sbjct: 69 EVTEFSASSCLTLLGSLHHCAVTTSEGIGNSRDGFHAVQRRLSGFHASQCGFCTPGMCMS 128
Query: 478 MYTLL 492
+Y+ L
Sbjct: 129 IYSAL 133
>03_06_0252 -
32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 111 bits (267), Expect = 3e-25
Identities = 51/125 (40%), Positives = 75/125 (60%)
Frame = +1
Query: 118 KELVFYVNGKKVIESSPDPEWTLLWYXXXXXXXXXXXXXCAEGGCGACTVMVSKYNRQEN 297
+ +V VNG++ DP TLL + C EGGCGAC V+VSKY+ +
Sbjct: 10 RAVVVAVNGERYEAVGVDPSTTLLEFLRTRTPVRGPKLGCGEGGCGACVVVVSKYDAVAD 69
Query: 298 KIIHLAVNACLAPVCAMHGLAVTTVEGIGSTKTKLHPVQERIAKAHGSQCGFCTPGIVMS 477
++ + ++CL + ++H AVTT EGIG+++ H VQ R++ H SQCGFCTPG+ MS
Sbjct: 70 EVTEFSASSCLTLLGSLHHCAVTTSEGIGNSRDGFHAVQRRLSGFHASQCGFCTPGMCMS 129
Query: 478 MYTLL 492
+Y+ L
Sbjct: 130 IYSAL 134
>07_01_1146 +
10756897-10757065,10763869-10765521,10765638-10765900,
10766057-10766266,10766818-10767036,10767379-10768344,
10768575-10768670,10768772-10768870,10769349-10769538,
10769623-10769855
Length = 1365
Score = 107 bits (258), Expect = 4e-24
Identities = 46/127 (36%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Frame = +1
Query: 118 KELVFYVNGKK--VIESSPDPEWTLLWYXXXXXXXXXXXXXCAEGGCGACTVMVSKYNRQ 291
+ +VF +NG++ V + DP TLL + C EGGCGAC ++++KYN +
Sbjct: 13 ERVVFALNGERQEVAAADVDPSTTLLEFIRTRTPFKGPKLGCGEGGCGACVILIAKYNPK 72
Query: 292 ENKIIHLAVNACLAPVCAMHGLAVTTVEGIGSTKTKLHPVQERIAKAHGSQCGFCTPGIV 471
+++ ++CL + ++H ++ T EG+G+TK H +Q+R++ H SQCGFCTPG+
Sbjct: 73 TDEVTEFNASSCLTLLYSIHFCSIITTEGLGNTKDGFHAIQKRMSGFHASQCGFCTPGMC 132
Query: 472 MSMYTLL 492
MS+++ L
Sbjct: 133 MSIFSSL 139
>07_01_0464 -
3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 97.1 bits (231), Expect = 8e-21
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +1
Query: 247 GCGACTVMVSKYNRQENKIIHLAVNACLAPVCAMHGLAVTTVEGIGSTKTKLHPVQERIA 426
GCGAC V+VS Y+ + +++ H AV++CL +H AVTT EG+GS++ LH + ER+A
Sbjct: 73 GCGACVVVVSAYDAEADEVAHAAVSSCLTLARGLHHRAVTTTEGLGSSRRGLHALHERLA 132
Query: 427 KAHGSQCGFCTPGIVMSM 480
H SQCGFCTPG+ MS+
Sbjct: 133 GFHASQCGFCTPGVCMSL 150
>07_01_1149 +
10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 36.7 bits (81), Expect = 0.011
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 433 HGSQCGFCTPGIVMSMYTLL 492
H SQCGFCTPG+ MS+++ L
Sbjct: 5 HASQCGFCTPGMCMSIFSSL 24
>12_02_0910 +
24225180-24225415,24225523-24225678,24226387-24226450,
24226738-24226947,24227678-24227866,24228044-24228342,
24228575-24228851,24229045-24229317,24230316-24230549,
24230707-24230856
Length = 695
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 269 ITVQAPHPPSAQPNFVPVSRSFFRKYHNNVHSGSGLDSITFL 144
+ V +P P A P P + +R+ +VH+ +GLD + FL
Sbjct: 34 VAVYSPRRPYAPPE--PWLPAAWRRTEADVHAAAGLDGVVFL 73
>05_05_0196 +
23152389-23152658,23153042-23153092,23153167-23153240,
23153356-23153443,23153541-23153738,23153824-23153895,
23154034-23154093,23154194-23154370,23154975-23155064
Length = 359
Score = 28.3 bits (60), Expect = 4.0
Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Frame = +1
Query: 253 GACTVMVSKYNR--QENKI-----IHLA-VNACLAPVCAMHGLAVTTVEGIGSTKTKL-- 402
G C V+K NR Q I +H N + C HG+ VT +GS++ L
Sbjct: 206 GVCNFSVTKLNRLLQSANIPPAMEMHPGWKNNKIFEACKKHGIHVTAYSPLGSSEKNLAH 265
Query: 403 HPVQERIAKAHGSQCGFCTPGIVMSMYTLLRSCKNIQYS 519
PV E+IA TPG V+ + L R I S
Sbjct: 266 DPVVEKIANKLNK-----TPGQVLIKWALQRGTSVIPKS 299
>08_02_0937 + 22801526-22802461
Length = 311
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 299 LFSCRLYLETITVQAPHPPSAQPNFVPVSRSFFRKYHN 186
LF C T+++ P PP ++P F P R F + N
Sbjct: 20 LFYCYECESTVSLPPPPPPPSRPLFCPRCRGEFLEEEN 57
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 266 TVQAPHPPSAQPNFVPVSRSFFRKYHNNVHSGSGLDS 156
TV P+ PN VP+ + R+ +++ S SGL S
Sbjct: 50 TVHVAPSPAPVPNAVPIQDAAGREAQSSIFSTSGLSS 86
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 290 CRLYLETITVQAPHPPSAQPNFVPVS 213
C L +TV AP PPSA P P S
Sbjct: 603 CGLTPAVVTVGAPPPPSAAPAPAPAS 628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,251,787
Number of Sequences: 37544
Number of extensions: 317801
Number of successful extensions: 702
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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