Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    26   3.9  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    25   5.2  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   9.0  

>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 407 NNRTLCLSQLKFRWCIQSDSD 345
           N R LCL+ + F W +Q D++
Sbjct: 427 NRRYLCLNLVGFIWTVQQDAE 447


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/68 (22%), Positives = 26/68 (38%)
 Frame = +2

Query: 251 HPKRAYFPPGCCILCTHRTHR*CREVTGAHSYHCHSGCTIGISVVINRVYDCFVVEKSKM 430
           +PK  Y   GCC  C+   H   ++    +      G  +G++       D +      +
Sbjct: 142 NPKGLYPKGGCCKFCS-SVHHLAKDCDQVNKDDVSFGHVVGVAGTTGADEDVYHEYAKTV 200

Query: 431 MAPTRADP 454
            APT+  P
Sbjct: 201 AAPTKKRP 208


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 87  LEKLVPACGIRTPVHRSTRMHRTSYLLG 170
           L KL+ A  +  P H S R+ R  YLLG
Sbjct: 267 LAKLLTAA-LDAPYHDSPRVRRQDYLLG 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,204
Number of Sequences: 5004
Number of extensions: 48700
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)