Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320D01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    31   0.56 
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336...    28   5.2  
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522...    27   9.1  
03_02_0771 + 11041882-11042073,11042669-11042851,11042946-110430...    27   9.1  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 139 VERCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 41
           + RCTGV I   G N   +I T      DFHGE
Sbjct: 157 ISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>02_05_0367 -
           28331479-28332358,28332432-28332988,28333454-28333671,
           28333748-28333831,28334199-28334373,28334572-28334574
          Length = 638

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 362 CTIGISVVINRVYDCFVVEKSKMMAPTRADPQHDPPAVLRTSSVLSAS 505
           CTI  SVV  ++   FVV+ + M   TR      PP+ +    +L+ +
Sbjct: 393 CTILYSVVFTQMASLFVVQGAAMRRTTRFPGFSVPPSSMSAFDILTVA 440


>03_05_0554 -
           25551220-25551310,25551562-25551695,25552115-25552221,
           25552359-25552437,25552524-25552613,25552790-25553044,
           25553388-25553537,25553677-25553976
          Length = 401

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -1

Query: 326 PLDITG-AFCECIKYSTQVGN--KHVLDE-KEEEAQRGSTRFCLLIMTQLNFE 180
           P+ I G AF +C++    +    K ++DE KE   +RGS  F  +++ +LN E
Sbjct: 137 PIGIPGTAFYKCMQGRKNIMKMLKELIDERKEASGRRGSIDFIDVLLEELNEE 189


>03_02_0771 +
           11041882-11042073,11042669-11042851,11042946-11043020,
           11043089-11043283,11043380-11043478,11044189-11044352,
           11045676-11045742,11045842-11045894,11046287-11046413,
           11047439-11047627,11048201-11048287,11048411-11048565,
           11048814-11048933,11049043-11049268,11049729-11049788,
           11049877-11050050,11050138-11050247,11050417-11050582
          Length = 813

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -2

Query: 475 HSRWVMLWVRTGGCHHFALFHHETIVHSVYHN*NSDGASRVTVIAMSSCDLSTSPVRSVS 296
           H R V+ W+   GCH F  F + + +  +      D A R T+ A    D +   +R  S
Sbjct: 610 HERPVVNWLWAAGCHPFGPFSNSSKISQIL----QDVALRTTIYA--QVDAALHKIRDTS 663


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,834,095
Number of Sequences: 37544
Number of extensions: 333533
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)