Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320D01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.4  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 370 RNFSCDKQSVRLFRGGKEQNDGTHPC 447
           RNFSC     R F+   EQ+D  + C
Sbjct: 13  RNFSCYYSLKRHFQDKHEQSDTLYVC 38


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 445 TGGCHHFALFHHETIVHSVYHN*NSDGAS 359
           T G HH  + H  + +H+  H+ +S  A+
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAAT 439


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 308 AFCECIKYSTQVGN 267
           A C  IKYST  GN
Sbjct: 152 ALCNHIKYSTNKGN 165


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 361 MHHRNFSCDKQSVRLFRGGKEQNDG 435
           +++RN +  K +VR+F G KE   G
Sbjct: 489 INNRNNTSMKGTVRIFIGPKEDERG 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,699
Number of Sequences: 438
Number of extensions: 3467
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)