Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320C09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 281 6e-77
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 280 8e-77
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 280 8e-77
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 122 2e-29
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 117 1e-27
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 80 2e-16
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 29 0.56
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.56
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 0.73
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 1.7
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 5.2
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 6.8
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 6.8
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 6.8
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 9.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 281 bits (688), Expect = 6e-77
Identities = 130/173 (75%), Positives = 150/173 (86%)
Frame = +3
Query: 3 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 182
NMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 101 NMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG- 159
Query: 183 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 362
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K
Sbjct: 160 -WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKA 218
Query: 363 GKADGKCLIEALDAILPPARPTDKPLRLPLQDVYXIGGIGTVPVGRVETGVLK 521
G GK L+EA+D+I PPARPTDKPLRLPLQDVY IGGIGTVPVGRVETGV+K
Sbjct: 219 GVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIK 271
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 280 bits (687), Expect = 8e-77
Identities = 129/173 (74%), Positives = 150/173 (86%)
Frame = +3
Query: 3 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 182
NMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 101 NMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG- 159
Query: 183 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 362
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K
Sbjct: 160 -WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKA 218
Query: 363 GKADGKCLIEALDAILPPARPTDKPLRLPLQDVYXIGGIGTVPVGRVETGVLK 521
G GK L+EA+D+I PPARPTDKPLRLPLQDVY IGGIGTVPVGRVETGV+K
Sbjct: 219 GVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIK 271
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 280 bits (687), Expect = 8e-77
Identities = 129/173 (74%), Positives = 150/173 (86%)
Frame = +3
Query: 3 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 182
NMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T
Sbjct: 101 NMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG- 159
Query: 183 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 362
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K
Sbjct: 160 -WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKA 218
Query: 363 GKADGKCLIEALDAILPPARPTDKPLRLPLQDVYXIGGIGTVPVGRVETGVLK 521
G GK L+EA+D+I PPARPTDKPLRLPLQDVY IGGIGTVPVGRVETGV+K
Sbjct: 219 GVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIK 271
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 122 bits (295), Expect = 2e-29
Identities = 75/172 (43%), Positives = 98/172 (56%), Gaps = 3/172 (1%)
Frame = +3
Query: 6 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 185
MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V VNK+D
Sbjct: 272 MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS-- 329
Query: 186 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKGWQVER 356
+SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+K
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK------ 383
Query: 357 KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYXIGGIGTVPVGRVETG 512
G L+ ALD ++PP +P KPLRL + DVY TV GRVE G
Sbjct: 384 ------GPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAG 428
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 117 bits (281), Expect = 1e-27
Identities = 65/177 (36%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Frame = +3
Query: 3 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 182
NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD
Sbjct: 332 NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 391
Query: 183 PYSEPRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKMPWFKGWQV 350
+SE R++E ++S +++++ GYN V ++P+S + G N+ + S+ PW++
Sbjct: 392 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQ---- 447
Query: 351 ERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYXIGGIGTVPVGRVETGVLK 521
G L+E LD++ R + P +P+ Y +GT+ G++E G +K
Sbjct: 448 --------GPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIK 494
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 80.2 bits (189), Expect = 2e-16
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Frame = +3
Query: 3 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 182
NMITG + D A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP
Sbjct: 132 NMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEP 184
Query: 183 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNM-LEPSTKMPWFKGWQVERK 359
E E+++ +S Y G+ GDN + + + +G + E
Sbjct: 185 DMIELVEMEMRELLSEY-----------------GFDGDNTPIVSGSALCALEGREPE-- 225
Query: 360 EGKADGKCLIEALDA-ILPPARPTDKPLRLPLQDVYXIGGIGTVPVGRVETGVLK 521
G L+EA+D+ I P R TD P + ++DV+ I G GTV GRVE G LK
Sbjct: 226 IGLNSITKLMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLK 280
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 28.7 bits (61), Expect = 0.56
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +3
Query: 6 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 185
M+ G + D A+L++A QT EH + +K +I+ NK+D
Sbjct: 125 MLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHIIILQNKVDLIRES 178
Query: 186 YSEPRFEEIKKEVSSYI 236
+E ++ I K + +
Sbjct: 179 AAEEHYQSILKFIKGTV 195
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 28.7 bits (61), Expect = 0.56
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 324 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYXIGGIGTVPVGRV 503
+P K V K GK + L E + I PP + PLR L D + G + + R+
Sbjct: 206 IPMSKPILVSSKTGKNVEQILPEIIQKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRI 265
Query: 504 ETGVLK 521
G +K
Sbjct: 266 MEGFIK 271
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 28.3 bits (60), Expect = 0.73
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -2
Query: 424 GRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 287
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 187 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 357
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 358 RKA 366
++
Sbjct: 205 SQS 207
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 165 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 335
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 253 TQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLT 432
T L L+ F T+T W++ PK L R R + A L N L + H P +
Sbjct: 360 TPLGELNWIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHSCHPQS 419
Query: 433 SP 438
SP
Sbjct: 420 SP 421
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 216 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 341
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 283 LDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLK 393
LD + W++QP C + DG A L++NA LK
Sbjct: 149 LDKLKDRLWNVQPTCALTGDGLLE-GLAWLSQNAKLK 184
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 517 NTPVSTLPTGTVPIPPI 467
N P S LPT VP+P I
Sbjct: 666 NPPTSALPTVPVPLPSI 682
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,755
Number of Sequences: 5004
Number of extensions: 50052
Number of successful extensions: 190
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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