Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320C09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   347   5e-98
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   347   5e-98
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   332   1e-93
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   293   9e-82
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.7  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  347 bits (852), Expect = 5e-98
 Identities = 164/173 (94%), Positives = 166/173 (95%)
 Frame = +3

Query: 3   NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 182
           NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP
Sbjct: 44  NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 103

Query: 183 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 362
           PYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKE
Sbjct: 104 PYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKE 163

Query: 363 GKADGKCLIEALDAILPPARPTDKPLRLPLQDVYXIGGIGTVPVGRVETGVLK 521
           GK +GKCLIEALDAILPP RPTDK LRLPLQDVY IGGIGTVPVGRVETGVLK
Sbjct: 164 GKVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLK 216


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  347 bits (852), Expect = 5e-98
 Identities = 164/173 (94%), Positives = 166/173 (95%)
 Frame = +3

Query: 3   NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 182
           NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP
Sbjct: 101 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160

Query: 183 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 362
           PYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKE
Sbjct: 161 PYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKE 220

Query: 363 GKADGKCLIEALDAILPPARPTDKPLRLPLQDVYXIGGIGTVPVGRVETGVLK 521
           GK +GKCLIEALDAILPP RPTDK LRLPLQDVY IGGIGTVPVGRVETGVLK
Sbjct: 221 GKVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLK 273


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  332 bits (817), Expect = 1e-93
 Identities = 156/173 (90%), Positives = 163/173 (94%)
 Frame = +3

Query: 3   NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 182
           NMITGTSQADCAVLIVAAG GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+P
Sbjct: 101 NMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDP 160

Query: 183 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 362
           PYSE RFEEIKKEVSSYIKKIGYN A+VAFVPISGWHGDNMLEPS K PW+KGW+VERK+
Sbjct: 161 PYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKD 220

Query: 363 GKADGKCLIEALDAILPPARPTDKPLRLPLQDVYXIGGIGTVPVGRVETGVLK 521
           G ADGK LIEALDAILPP+RPTDK LRLPLQDVY IGGIGTVPVGRVETG+LK
Sbjct: 221 GNADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILK 273


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  293 bits (718), Expect = 9e-82
 Identities = 137/144 (95%), Positives = 139/144 (96%)
 Frame = +3

Query: 3   NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 182
           NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP
Sbjct: 28  NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 87

Query: 183 PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKE 362
           PYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKE
Sbjct: 88  PYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKE 147

Query: 363 GKADGKCLIEALDAILPPARPTDK 434
           GK +GKCLIEALDAILPP RPTDK
Sbjct: 148 GKVEGKCLIEALDAILPPTRPTDK 171


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 323 FG*RLQHVVSVPSRNGHESDSSWV 252
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 166 WIPLNHHTVSPDLRKSRRKY 225
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 107 LTGLTVLRDTSFEFTGTGSYDEHSAISLR 21
           LTGLTVLR  +  +    S  E    S R
Sbjct: 257 LTGLTVLRTFNASYNSLDSLPEGLFASTR 285


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 218 LLDFLKSGLTVWWFSGIH 165
           L  F++SG+T  W S I+
Sbjct: 56  LSHFIESGITAIWLSPIN 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,944
Number of Sequences: 438
Number of extensions: 3427
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)