Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.0  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   9.0  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 264  YDSVSWISNI 293
            YDS+SWISNI
Sbjct: 1047 YDSLSWISNI 1056


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 237 LVDTHKCSLYDSVSWISNIIDTK*KTK 317
           L+    C   DS+SWIS++   K ++K
Sbjct: 562 LLCVRSCIAIDSISWISSLQGVKFRSK 588


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 141 YERPKDRRLDSFKSRQLNICFMIAICLKLYFFNVIILDDSQ 19
           Y+R K  R+D  K   L   F   +C  L F N++ L D+Q
Sbjct: 694 YQRQK-HRIDGAK---LGFQFTQVLCDSLIFLNILRLSDAQ 730


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,029
Number of Sequences: 5004
Number of extensions: 40573
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)