Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320C06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0168 - 1883380-1883594,1884572-1888325                           29   3.0  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   4.0  
01_03_0282 - 14580875-14580891,14582126-14585855                       28   4.0  

>10_01_0168 - 1883380-1883594,1884572-1888325
          Length = 1322

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 521 RLKPKQIKIMSHLNYLFPEGCKEVE 447
           R  PK +K M+ L +L+  GCK +E
Sbjct: 638 RRLPKDMKYMTSLRHLYTNGCKNLE 662


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 521 RLKPKQIKIMSHLNYLFPEGCKEVE 447
           R  PK +K M+ L +L+  GC+++E
Sbjct: 635 RCLPKNMKYMTSLRHLYTHGCEQLE 659


>01_03_0282 - 14580875-14580891,14582126-14585855
          Length = 1248

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 521 RLKPKQIKIMSHLNYLFPEGCKEVE 447
           R  PK +K M+ L +L+ +GC ++E
Sbjct: 637 RCLPKNMKYMTSLRHLYTQGCTDLE 661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,711,144
Number of Sequences: 37544
Number of extensions: 148002
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)