Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320C06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF040653-6|AAB95032.1|  508|Caenorhabditis elegans F-box b prote...    28   3.5  
U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpa...    28   4.7  
AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical...    28   4.7  
AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.      28   4.7  
Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical ...    27   6.2  
AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.      27   6.2  

>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -1

Query: 320 HEPPENFY*LLNNI--SVVFYFIVVIQSLWSSY 228
           H PP N Y LL NI    +F F   I   W SY
Sbjct: 116 HTPPRNLYVLLENIVFRTIFEFHHFIHQNWISY 148


>AF040653-6|AAB95032.1|  508|Caenorhabditis elegans F-box b protein
           protein 51 protein.
          Length = 508

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162 LTIESRQMAFIETVVSLSRVFFQNIESVNL 73
           LT++ RQ      +++LS+   QNIE +NL
Sbjct: 458 LTLQDRQPLTSSQLMTLSQAMLQNIEKINL 487


>U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpase
           protein 5 protein.
          Length = 873

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 282 YFSCVLFYCCHSILMEFIFYW 220
           +  C+  Y C  I+++++F+W
Sbjct: 585 FMGCIFMYLCLQIILKWLFFW 605


>AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical
           protein F31F4.15 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 129 ETVVSLSRVFFQNIESVNLYHISILSTNSF 40
           +T+  LSRV+ Q +E+++++H  I   + F
Sbjct: 194 DTISILSRVYAQTLENIHMWHTDIRDFDQF 223


>AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.
          Length = 873

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 282 YFSCVLFYCCHSILMEFIFYW 220
           +  C+  Y C  I+++++F+W
Sbjct: 585 FMGCIFMYLCLQIILKWLFFW 605


>Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 282 YFSCVLFYCCHSILMEFIFYWI 217
           +  C+  Y C  +LM++IF+++
Sbjct: 594 FLGCIFVYLCLQVLMKWIFFYV 615


>AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 282 YFSCVLFYCCHSILMEFIFYWI 217
           +  C+  Y C  +LM++IF+++
Sbjct: 594 FLGCIFVYLCLQVLMKWIFFYV 615


>AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.
          Length = 865

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 282 YFSCVLFYCCHSILMEFIFYWI 217
           +  C+  Y C  +LM++IF+++
Sbjct: 594 FLGCIFVYLCLQVLMKWIFFYV 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,405,521
Number of Sequences: 27780
Number of extensions: 164323
Number of successful extensions: 359
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)