Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320C06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   0.62 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 284 YLIINKSFLEVHVEHFNNIFN*QTKNYLILTK 379
           Y  +NKS L  H++  +N++  +  N    TK
Sbjct: 24  YSCVNKSMLNSHLKSHSNVYQYRCANCTYATK 55


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 236 SSYFIGSQLIKLCKPLMAILLCCI 165
           +SY   S +I    P+M I++C +
Sbjct: 809 NSYVDASYMIAFAYPIMLIVVCTV 832


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -3

Query: 315 TSRKLLLIIK*YFSCVLFYCCHSILMEFIFYWITVNQAM*TPNGYII 175
           T+   + +I  YF+C++F    S+++      + +N    TP+ Y++
Sbjct: 317 TTSDAVPLIGSYFNCIMFMVASSVVLTV----LVLNFHHRTPDRYVM 359


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 315 TSRKLLLIIK*YFSCVLFYCCHSILM 238
           T+   + +I  YF+C++F    S+++
Sbjct: 249 TTSDAVPLIGSYFNCIMFMVASSVVL 274


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 315 TSRKLLLIIK*YFSCVLFYCCHSILM 238
           T+   + +I  YF+C++F    S+++
Sbjct: 249 TTSDAVPLIGSYFNCIMFMVASSVVL 274


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 315 TSRKLLLIIK*YFSCVLFYCCHSILM 238
           T+   + +I  YF+C++F    S+++
Sbjct: 249 TTSDAVPLIGSYFNCIMFMVASSVVL 274


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -3

Query: 282 YFSCVLFYCCHSILMEFIFYWITVNQAM*TPNGYII 175
           YF+C++F    S+++      + +N    TP+ Y++
Sbjct: 328 YFNCIMFMVASSVVLTV----LVLNFHHRTPDRYVM 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,841
Number of Sequences: 438
Number of extensions: 1843
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)