Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320C05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.3  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   7.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 407  SPREAKKSLPRNGKPGR 357
            SP   +KSLPR G+  R
Sbjct: 1830 SPMSEQKSLPRRGRSSR 1846


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 407  SPREAKKSLPRNGKPGR 357
            SP   +KSLPR G+  R
Sbjct: 1826 SPMSEQKSLPRRGRSSR 1842


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 83  KDCTVVSLCSWMYSRGRFIS 24
           KD  VV    W Y +G F+S
Sbjct: 73  KDKNVVQKFLWWYKQGMFLS 92


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 83  KDCTVVSLCSWMYSRGRFIS 24
           KD  VV    W Y +G F+S
Sbjct: 73  KDKNVVQKFLWWYKQGMFLS 92


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 128 SSYITTPSLTVGCTVK 81
           +SY  TP++++ C  K
Sbjct: 18  TSYFVTPTMSIKCNCK 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,261
Number of Sequences: 438
Number of extensions: 3239
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)