Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320C04f
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 142 2e-35
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 137 9e-34
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 29 0.36
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 28 0.62
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 28 0.83
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.83
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 1.1
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 2.5
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 5.8
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 7.7
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.7
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 7.7
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 7.7
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 7.7
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 142 bits (345), Expect = 2e-35
Identities = 70/110 (63%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Frame = -2
Query: 383 FMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTG 204
FMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG +T+FGGG+STG
Sbjct: 12 FMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFGGGRSTG 71
Query: 203 FALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 57
FALIYD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 72 FALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 137 bits (331), Expect = 9e-34
Identities = 65/110 (59%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
Frame = -2
Query: 383 FMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTG 204
FMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG +T++GGG++TG
Sbjct: 12 FMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYGGGRTTG 71
Query: 203 FALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 57
FALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 72 FALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.36
Identities = 29/79 (36%), Positives = 38/79 (48%)
Frame = -1
Query: 354 ADGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRS 175
A G +SR Q+DRD E R+N + R S R++D RR R D R+ R
Sbjct: 14 AQGRNYESSRSRGDQRDRDYREYRRNYRD-ERSS--RRYEDSQRRDYSPARRRD-RYERH 69
Query: 174 GQEVRAQAQVSPPRPVREE 118
+ VR + SP RPV E
Sbjct: 70 RESVREE---SPRRPVEHE 85
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 28.3 bits (60), Expect = 0.62
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 370 LLVMKLASANSRCSFTHFELFSII 441
+ + + +S SRCSFT FE+ SI+
Sbjct: 771 IFISRFSSVISRCSFTDFEINSIL 794
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 27.9 bits (59), Expect = 0.83
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +1
Query: 289 FSRISVLLTVGFPGCKTSQ------TICLRANNLLVMKLASANSRCSFTHFELFSII 441
FS +++ T + CK + TIC AN+L +K+ + S S FE+ S++
Sbjct: 73 FSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVL 129
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.83
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 167 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 69
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 302 EIREKLAKMYKVTPDVVFVFGFKTNFGG 219
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 2.5
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 255 SVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRAQ-AQVSPPRPVREEEA 112
S R + +LRR + DLR +R G E RA+ A+ PR V E A
Sbjct: 385 SEAFRRRQELRRERRRQAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVA 433
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 316 VGFPGC-KTSQTICLRANNLLVMKLASANSRCS 411
+GFPG + + + ++ANN L KLA +RC+
Sbjct: 454 LGFPGSPREAVSNTVQANNSLHEKLAMYQNRCN 486
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 173 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 69
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 220 PPKFVLKPNTNTTSGVTLYILASFS 294
PPK LKP+ +T+ ++ Y LA S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 7.7
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -2
Query: 167 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 66
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 292 SRISVLLTVGFPGCKTSQTICLRANNL 372
SRI + ++G K Q++CLR N +
Sbjct: 48 SRIQSMASLGLERFKNLQSLCLRQNQI 74
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 7.7
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -2
Query: 125 EKKRPTRKQRKERKNRMKKVRGT 57
E+ +P ++ +E +NR+ ++RGT
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,172
Number of Sequences: 5004
Number of extensions: 40115
Number of successful extensions: 133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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