Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320C04f
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 155 1e-38
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 152 2e-37
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 120 2e-32
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 1.1
02_05_0637 + 30543158-30543895 28 4.4
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 5.8
03_02_0227 + 6576333-6577769 27 7.6
01_06_0355 + 28657833-28660665,28660762-28661126 27 7.6
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 155 bits (377), Expect = 1e-38
Identities = 72/109 (66%), Positives = 89/109 (81%), Gaps = 1/109 (0%)
Frame = -2
Query: 383 FMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFGGGKST 207
FMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+FGGGKST
Sbjct: 17 FMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHFGGGKST 76
Query: 206 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 60
GF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 77 GFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 152 bits (368), Expect = 2e-37
Identities = 71/109 (65%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Frame = -2
Query: 383 FMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFGGGKST 207
FMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+FGGGKST
Sbjct: 17 FMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKST 76
Query: 206 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 60
GF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 77 GFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 120 bits (289), Expect(2) = 2e-32
Identities = 55/83 (66%), Positives = 69/83 (83%), Gaps = 1/83 (1%)
Frame = -2
Query: 383 FMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFGGGKST 207
FMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+FGGGKST
Sbjct: 17 FMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKST 76
Query: 206 GFALIYDTLDLAKKFEPKHRLAR 138
GF LIYD LD AKK+EPK+RL R
Sbjct: 77 GFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 2e-32
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = -2
Query: 137 HGLYEKKRPTRKQRKERKNRMKKVRG 60
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 207 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 106
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>02_05_0637 + 30543158-30543895
Length = 245
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 314 RLVFLDVKHRKPSACAPTICWS*NLRV 394
RL FL R+P+A P WS NLRV
Sbjct: 68 RLYFLVALPRRPAAGPPRRAWSGNLRV 94
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 134 GLYEKKRPTRKQRKERKNRMKK 69
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>03_02_0227 + 6576333-6577769
Length = 478
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -2
Query: 410 EQRLFALASFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 231
E+R +FM + L VC L P +P +K I++ L + D FV F++
Sbjct: 87 EKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAK--IKQLLLSLLVSRKD-AFVPVFRS 143
Query: 230 NFG 222
NFG
Sbjct: 144 NFG 146
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 241 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMKL 387
PN S +TL L + + L +GFP CK + + + LL + L
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLLKVVL 718
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,403,163
Number of Sequences: 37544
Number of extensions: 279532
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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