Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320C02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0627 - 35172246-35172349,35172903-35173005,35173107-351731... 33 0.18
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174... 31 0.74
01_05_0680 - 24238840-24241242 30 1.3
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225... 29 1.7
10_08_0664 - 19677371-19677393,19678071-19678173,19678397-196784... 29 3.0
05_01_0550 + 4820086-4821255,4822112-4822321,4822429-4822524,482... 29 3.0
09_02_0124 - 4546722-4547107,4547677-4547854,4548027-4548215,454... 28 4.0
05_01_0252 - 1914060-1914142,1914243-1914345,1914516-1914599,191... 28 4.0
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 28 4.0
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 28 4.0
11_02_0043 - 7690506-7691726 27 9.1
05_02_0097 - 6573093-6573254,6573297-6573398,6573922-6574005,657... 27 9.1
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 27 9.1
04_04_0135 + 23020314-23020389,23021418-23021479,23021935-230220... 27 9.1
03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484 27 9.1
03_01_0151 + 1206555-1206998,1207112-1207543 27 9.1
02_04_0520 - 23628183-23628195,23629354-23630036 27 9.1
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039... 27 9.1
>03_06_0627 -
35172246-35172349,35172903-35173005,35173107-35173190,
35173504-35173599,35173686-35173736,35173805-35173945,
35174098-35174154,35175089-35175163,35176255-35176527,
35176608-35176667,35176754-35176846,35177196-35177348
Length = 429
Score = 32.7 bits (71), Expect = 0.18
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 95 CYSICHKDNDPQENVINERTHLLEVTE 175
C ICH+D PQ ++N TH L++ +
Sbjct: 204 CVGICHRDIKPQNVLVNPHTHQLKICD 230
>10_08_0448 +
18015609-18016052,18017147-18017248,18017332-18017475,
18017555-18017705,18017793-18017820,18018456-18018621,
18018701-18018764,18019320-18019423,18019572-18019710,
18020114-18020232,18020333-18020485,18020565-18020654,
18020952-18021029,18021671-18021829,18021914-18022117,
18022209-18022414,18022495-18022630,18022859-18022898,
18023329-18023408,18023569-18024228
Length = 1088
Score = 30.7 bits (66), Expect = 0.74
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 92 CCYSICHKDNDPQENVINERTHLLEVTEQQQETLVPVVSA 211
CCYSI D+ + E +++ ++++ Q+ + +VSA
Sbjct: 384 CCYSIAGVDDAQMFRTVTEAMNIVHISKEDQDNVFTMVSA 423
>01_05_0680 - 24238840-24241242
Length = 800
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 332 CTRWPLACTGPARPRRSHYLQSHEVSYSKQSVRLVSSVVWTLIPQVPASPVAAPLLLVDV 153
CT + + P+ P +H+ +S + VR +SSV+ ++ P+S A LL
Sbjct: 20 CTAAAASASQPSEPLSAHFTNGRPLSRAPAVVRDLSSVLRAILAASPSSHSRAYPLLKSA 79
Query: 152 SF 147
+F
Sbjct: 80 AF 81
>01_02_0071 +
10822008-10822011,10822219-10822364,10822452-10822544,
10822722-10822781,10822855-10823127,10823229-10823303,
10823419-10823475,10823593-10823733,10823813-10823863,
10823905-10823955,10823956-10824051,10824159-10824242,
10824330-10824432,10824518-10824600
Length = 438
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 95 CYSICHKDNDPQENVINERTHLLEVTE 175
C +CH+D PQ ++N H L++ +
Sbjct: 203 CVGVCHRDIKPQNILVNPHNHQLKLCD 229
>10_08_0664 -
19677371-19677393,19678071-19678173,19678397-19678480,
19678557-19678652,19678735-19678785,19679043-19679183,
19679258-19679314,19679559-19679633,19679737-19680009,
19680114-19680173,19680513-19680605,19680692-19680946,
19681832-19681891
Length = 456
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 104 ICHKDNDPQENVINERTHLLEVTE-QQQETLVP 199
+CH+D PQ ++N TH L++ + + LVP
Sbjct: 261 VCHRDIKPQNLLVNPHTHQLKLCDFGSAKKLVP 293
>05_01_0550 +
4820086-4821255,4822112-4822321,4822429-4822524,
4822610-4822828,4823201-4823395,4823466-4823612,
4823712-4823861,4825015-4825145,4825234-4825477
Length = 853
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +2
Query: 8 RYKTFMQSDDEDTSLHSCFNSLKTAVMGCCYSICHKDNDPQENVINE--RTHLLEVTEQQ 181
RYK + + L C N K + + H D ++ V++E + + +QQ
Sbjct: 687 RYKEWAERSSSINQLVHCINGFKEVALSNSQAFDHIDMSEKQKVLDECSEAEIWLIEKQQ 746
Query: 182 QETLVP 199
Q+ +P
Sbjct: 747 QQDALP 752
>09_02_0124 -
4546722-4547107,4547677-4547854,4548027-4548215,
4548602-4548712,4549024-4549071,4549825-4549966,
4550349-4550695
Length = 466
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 218 PPRKPDEQTALNRILHETANNVIDVGALG 304
PP PDE N+ H+T N +++ LG
Sbjct: 28 PPYVPDEAEENNQFYHQTMNEFLNMNQLG 56
>05_01_0252 -
1914060-1914142,1914243-1914345,1914516-1914599,
1914687-1914782,1914859-1914909,1915001-1915141,
1915221-1915277,1915396-1915470,1915556-1915828,
1915935-1915994,1916109-1916201,1916281-1916400
Length = 411
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 104 ICHKDNDPQENVINERTHLLEVTE 175
+CH+D PQ ++N TH L++ +
Sbjct: 196 VCHRDIKPQNLLVNPHTHQLKLCD 219
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 314 ACTGPARPRRSHYLQSHEVSYSKQSVRLVSSVVWTLIPQVPASP 183
AC PA PRRS L + + + VRL + P++ ASP
Sbjct: 16 ACASPAVPRRSLLLSTAAAALQPEPVRLTRGA--SAAPKLRASP 57
>01_01_1054 +
8330081-8330137,8330229-8330321,8330445-8330504,
8330703-8330975,8331107-8331181,8331269-8331325,
8331409-8331549,8331656-8331706,8331795-8331944,
8331974-8332057,8332171-8332273,8332451-8332527,
8333469-8333704,8334000-8334078,8335123-8335218,
8335735-8335828,8336325-8336423,8336663-8337453
Length = 871
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 104 ICHKDNDPQENVINERTHLLEVTE 175
+CH+D PQ ++N TH L++ +
Sbjct: 175 VCHRDIKPQNLLVNPHTHQLKLCD 198
>11_02_0043 - 7690506-7691726
Length = 406
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -3
Query: 486 LISSLSAAGIGGQLSRATRSA 424
L+ SL+AAG GG+ SRA+ SA
Sbjct: 266 LLRSLAAAGGGGKASRASSSA 286
>05_02_0097 -
6573093-6573254,6573297-6573398,6573922-6574005,
6574190-6574285,6574373-6574423,6574537-6574677,
6575025-6575081,6575163-6575237,6575323-6575595,
6575689-6575748,6576184-6576285,6576377-6576451
Length = 425
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 104 ICHKDNDPQENVINERTHLLEVTE-QQQETLVP 199
+CH+D PQ +++ TH +++ + +TLVP
Sbjct: 184 VCHRDVKPQNVLVDPLTHQVKLCDFGSAKTLVP 216
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 158 LLEVTEQQQETLVPVVSASTPPRKPDEQTALNRILHE 268
LLEV + + L+P+V A P P ++ +N + E
Sbjct: 125 LLEVNGESKIVLIPIVVAVDCPFPPSDKIGINSVQRE 161
>04_04_0135 +
23020314-23020389,23021418-23021479,23021935-23022026,
23022210-23022309,23022394-23022435,23022512-23022595,
23022613-23022827,23022915-23022933
Length = 229
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 141 ITFSCGSLSLWQML*QQPITAVFKELKHECNEVSSSSDCI 22
ITFS LS WQ++ Q KEL+ N++ S CI
Sbjct: 67 ITFSSPVLSAWQLMGQDLSGLGVKELQTLENQLEMSIRCI 106
>03_05_0873 + 28428190-28428482,28428620-28428791,28428882-28429484
Length = 355
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 115 RQRPTGERYKRKDTSTRSNGAATGDAGTCG 204
R+RP G ++ R D T + G +GD G
Sbjct: 272 RRRPGGAQFDRADEETLAGGEVSGDGKKSG 301
>03_01_0151 + 1206555-1206998,1207112-1207543
Length = 291
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 422 HAERVALLSCPPIP-AADKELISGAVRRAAA 511
HA A SC P P AD +L+ V +AAA
Sbjct: 46 HAAAAAFASCCPCPPVADLDLLESCVTQAAA 76
>02_04_0520 - 23628183-23628195,23629354-23630036
Length = 231
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 104 ICHKDNDPQENVINERTHLLEVTEQQQETLVPVVSASTPPRKPDEQTALNR 256
+ ++D P+ +I + H++ V TL P P P QTA +R
Sbjct: 163 VVYRDLKPENVLIQDSGHIMLVDFDLSTTLPPPPPPPPPDTAPPPQTARSR 213
>01_06_1579 +
38402868-38402894,38403394-38403582,38403817-38403918,
38404005-38405963,38406050-38406105,38406332-38406368
Length = 789
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 185 ETLVPVVSASTPPRKPDEQTALNR--ILHETANNVIDVGAL 301
E LV ++ TP K D TAL I HE ++ GA+
Sbjct: 620 EPLVDLLGEGTPQGKKDAATALFNLSIFHEHKTRIVQAGAV 660
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,850,425
Number of Sequences: 37544
Number of extensions: 229280
Number of successful extensions: 894
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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