Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320C01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 118 3e-27
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 118 3e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 100 6e-22
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.56
07_03_1414 - 26403361-26403969 31 0.74
07_03_1422 + 26462871-26463434,26463772-26463897 29 1.7
07_03_1413 - 26396426-26396890 29 1.7
01_01_1202 - 9681836-9683146 29 2.3
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548... 29 3.0
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 4.0
02_02_0061 + 6468190-6471046,6471318-6471736 28 5.2
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 27 6.9
04_04_1363 - 32898345-32898371,32898986-32899837,32900234-329005... 27 6.9
11_04_0354 + 16697571-16700256,16700335-16700759 27 9.1
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 118 bits (284), Expect = 3e-27
Identities = 58/121 (47%), Positives = 74/121 (61%)
Frame = +2
Query: 155 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 334
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 335 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 514
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 82 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140
Query: 515 K 517
+
Sbjct: 141 Q 141
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 118 bits (284), Expect = 3e-27
Identities = 58/121 (47%), Positives = 74/121 (61%)
Frame = +2
Query: 155 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 334
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 335 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 514
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 66 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124
Query: 515 K 517
+
Sbjct: 125 Q 125
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 100 bits (240), Expect = 6e-22
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = +2
Query: 155 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 334
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 335 KTTAKGLFKILEKYRPE 385
K ++L++ + E
Sbjct: 83 KNLGCQKERLLKRAQAE 99
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.56
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 253 PHPAPEGCTSASSESAPSDQP 315
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_1414 - 26403361-26403969
Length = 202
Score = 30.7 bits (66), Expect = 0.74
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 265 ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 125
AL A + P + G++ + + +T G+ L P LEE + GL L+D
Sbjct: 76 ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 265 ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 125
AL + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 74 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 265 ALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEERIHDLLGLNLFD 125
AL + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 28 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>01_01_1202 - 9681836-9683146
Length = 436
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +1
Query: 112 RPIGGQKG*AQEDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASS 291
R +GG + RE +L EA SGHS+N G + Q+ H E S+
Sbjct: 262 RDVGGSRS---SIRERNLEREAPMAVSVSGHSSNQGGSSQHAVIQIEQHEEGETVPLVSA 318
Query: 292 ESAPSDQP 315
SA + P
Sbjct: 319 ASANNAAP 326
>04_04_1159 -
31352922-31353098,31354117-31354267,31354581-31354812,
31354902-31355112,31355791-31355909,31355994-31356176,
31356283-31356481,31356636-31357015,31357127-31357191,
31357925-31357990,31358427-31358501,31358781-31358852,
31359318-31359386,31359476-31359547,31359658-31359729,
31360126-31360230,31360282-31360353,31361053-31361230,
31361707-31361791
Length = 860
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -2
Query: 274 SLLALDADILGPSYKSGQVPSWLNALTNGKVLWPL---LEERIHDLLG-LNLFDHQWGGG 107
SL L+ + + SG++PS L+ LT K+LW +I D +G NL D ++ G
Sbjct: 164 SLFKLEELFIDSAGLSGELPSSLSKLTRMKILWASDNNFTGQIPDYIGSWNLTDLRFQGN 223
Query: 106 YF 101
F
Sbjct: 224 SF 225
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 200 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 108
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -2
Query: 274 SLLALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEE 161
SL L A +LG + +G +PS++ +L N K L +LEE
Sbjct: 111 SLQNLQALVLGENRLTGSIPSFIGSLANLKFL--ILEE 146
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 274 SLLALDADILGPSYKSGQVPSWLNALT 194
+L AL + +Y GQ+PSWL LT
Sbjct: 179 NLTALTMFSIADNYVHGQIPSWLGNLT 205
>04_04_1363 -
32898345-32898371,32898986-32899837,32900234-32900500,
32900723-32901025,32902329-32902433,32903361-32903548,
32903628-32903721
Length = 611
Score = 27.5 bits (58), Expect = 6.9
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Frame = +1
Query: 124 GQKG*AQEDRESSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSASSESAP 303
GQ+ A + R++ EE + CH +++ + Q + P+GC+S AP
Sbjct: 386 GQEA-AADQRDA--HEEHHDHCHAQSQGSSNVAGTMTGKNQEQGNENPDGCSSYCDIKAP 442
Query: 304 SD-QPIYPDTG-----QDYS*GPFQDFGEIQ 378
SD P D D+S F D G+ Q
Sbjct: 443 SDGSPSMSDATLNSKVSDWSSSSFHDHGDNQ 473
>11_04_0354 + 16697571-16700256,16700335-16700759
Length = 1036
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -2
Query: 301 GHFQTTLKYSLLALDADILGPSYKSGQVPSWLNALTNGKVLW 176
G + LK + +L L +Y +G++P+WL AL + K+++
Sbjct: 111 GDITSDLK-NCTSLQGISLKSNYLTGEIPAWLGALPSLKLIY 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,019
Number of Sequences: 37544
Number of extensions: 271802
Number of successful extensions: 1064
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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