Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   198   5e-52
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   194   7e-51
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    26   3.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  198 bits (482), Expect = 5e-52
 Identities = 97/131 (74%), Positives = 108/131 (82%)
 Frame = +1

Query: 1   YKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFY 180
           YKMKGDY+RYLAEFA G  R+ +A+ SL  YKAAS+IA  EL PTHPIRLGLALNFSVFY
Sbjct: 124 YKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFY 183

Query: 181 YEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGES 360
           YEILNSPDRAC LAK AFD+AI+ELD+LSEESYKDSTLIMQLLRDNLTLWTSD +    +
Sbjct: 184 YEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEYSAAA 243

Query: 361 ADAEQKEPAQD 393
           A     E AQ+
Sbjct: 244 AGG-NTEGAQE 253


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  194 bits (473), Expect = 7e-51
 Identities = 96/135 (71%), Positives = 111/135 (82%)
 Frame = +1

Query: 1   YKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFY 180
           YKMKGDY+RYLAEF  G   KEAA++SL AYKAASDIA+ ELPPT P+RLGLALNFSVFY
Sbjct: 123 YKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFY 182

Query: 181 YEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGES 360
           YEIL+SP+ AC LAK  FD+AI+ELD+LSEESYKDSTLIMQLLRDNLTLWTSD + + +S
Sbjct: 183 YEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEYN-QS 241

Query: 361 ADAEQKEPAQDGEDQ 405
           A  E    A   E++
Sbjct: 242 AKEEAPAAAAASENE 256


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 97  AASDIAMT--ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 231
           AA  + MT  +L  T P  LG+  +  V YY     PD A   AK A
Sbjct: 265 AAQSVIMTTDQLLNTIPFGLGIITSNRVAYYLGAGLPDNASLTAKVA 311


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 407 SWSSPSCAGSFCSASADSPSPCMSEVHS 324
           S SS S + +F SAS  SPS   S + S
Sbjct: 593 SISSSSTSSTFSSASTSSPSSISSSISS 620


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 176 NTEKLSASPRRMGWVGGSS 120
           N EKL A+P+R  ++GG+S
Sbjct: 154 NIEKLGANPKRGFFLGGAS 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,014
Number of Sequences: 5004
Number of extensions: 17752
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)