Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    33   0.034
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    30   0.18 
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    29   0.42 
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    28   0.97 
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   1.3  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    27   1.7  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    27   1.7  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    27   2.2  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    27   2.2  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.9  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    26   3.9  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   3.9  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   3.9  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   6.8  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.8  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   9.0  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 369 LSETFHQLTDVTLQRDPEKRHSASQLLNHAFFKQ 268
           LS  FH     +L  +P++R S+ +LL H F KQ
Sbjct: 606 LSSVFHDFLSKSLTVNPKQRPSSGELLRHPFLKQ 639


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -3

Query: 477 PPLEDNEMKSMYNTDSGVGDSADAVSRLRQVYATRKLSETFHQLTDVTLQRDPEKRHSAS 298
           PP +D E+K++Y         A++ S    V  + +  +    L    L  DP  R S  
Sbjct: 238 PPFQDKEVKTIYRKIK-----ANSYSFPSNVDISAEAKDLISSL----LTHDPSIRPSID 288

Query: 297 QLLNHAFFKQIRRADFLPGLIGRAKPIKP 211
            +++H FF     A  LP  I  + PI P
Sbjct: 289 DIVDHEFFHTGYMASTLPDEILHSMPIWP 317


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 369 LSETFHQLTDVTLQRDPEKRHSASQLLNHAFFKQIRRA 256
           +SET        L+ DP KR +A+  L H F  + R A
Sbjct: 260 ISETAKDFIKKCLENDPSKRLTAADALKHPFLSEKRPA 297


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 484 YRAPPRG*RDEKYVQHG*WSRRQRGRGVPAAAGVRDEEAVGDLPPAHRRDAAE 326
           Y  P R  R     + G  +RRQ      +++G+R  E + DL P  R+DAAE
Sbjct: 343 YSRPGRRPRSMTAPKGGARTRRQAAMYSNSSSGIR--ETMYDLKPHRRKDAAE 393


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 372  KLSETFHQLTDVTLQRDPEKRHSASQLLNHAFFKQIRR 259
            K+S       +   +RDPE+R  A  LL H +    R+
Sbjct: 1274 KISSLARDFIEQCFERDPEQRPRAVDLLTHPWITDFRK 1311


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 454 EKYVQHG*WSRRQRGRGVPAAAGVRDEEAVGDLPPAHRRDAAEGPGKKTFGLSTPKP 284
           EK VQ    S  +  R + +   +  E+ + ++   H  DAA       FG   PKP
Sbjct: 46  EKRVQDPSISEHECRRQIESKLLLYREQLLEEVSSQHSTDAAASDSNTNFGTENPKP 102


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -3

Query: 333 LQRDPEKRHSASQLLNHAFFKQIRRADFLPGLIGRAKPIKPDPDYMTALSIQEQLS---- 166
           L+RD  KR +  +LL H F   +    +L  L  +  P+    +    L +  ++S    
Sbjct: 584 LERDQRKRLTIPELLVHPFLNPL--PSYLTPLAKKPLPVSGHTNNAHPLRLSTEISASQL 641

Query: 165 EMVIEKSTE 139
            M+IE+S E
Sbjct: 642 SMIIERSVE 650


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -3

Query: 480 GPPLEDNEMKSMYNTDSGVGDSADAVSRLRQVYATRKLSETFHQLTDVTLQRDPEKRHSA 301
           GP      MK    +      S  A+  +R   ATRK++ T+    D ++Q+     H +
Sbjct: 71  GPVTPSFAMKRSQTSVQPSMSSQIAIGGMRNPMATRKIAGTYRDAPDNSMQQTSTGVHRS 130

Query: 300 SQLL 289
           S  L
Sbjct: 131 SSWL 134


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 333 LQRDPEKRHSASQLLNHAFF 274
           LQ DP+ R +A Q L H FF
Sbjct: 300 LQYDPKSRITAKQALEHVFF 319


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 352 PAHRRDAAEGPGKKTFGLSTPKPRVLQADPKSGLPARTHRT 230
           P+ R++A          LS+PK + + + PK+ L  R H++
Sbjct: 635 PSLRKNAMIARKSTADSLSSPKRQSVPSTPKASLSPRVHKS 675


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 351 QLTDVTLQRDPEKRHSASQLLN 286
           ++ +  LQR+P KR SA +LL+
Sbjct: 315 EIVEACLQREPNKRPSARELLS 336


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 372 KLSETFHQLTDVTLQRDPEKRHSASQLLNHAFF 274
           ++SE    L +  L+ +PEKR S S+ L H +F
Sbjct: 401 EISEEGIDLINRMLEINPEKRISESEALQHPWF 433


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 321 PEKRHSASQLLNHAFFKQIR 262
           P KR SA ++L H FF ++R
Sbjct: 294 PSKRISAIEVLTHPFFDELR 313


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 237 IGRAK-PIKPDPDYMTALSIQE 175
           +GR K PIKP P   +ALS++E
Sbjct: 48  LGRRKAPIKPRPGPTSALSVEE 69


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 151 LDNHLGELFLDREGRHVIGVRFDGLGASY 237
           ++NH    FL  E +++IG  F G    Y
Sbjct: 825 VENHSKSKFLGEESKNIIGYNFFGNATMY 853


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 510 YDSL*GELGTGPPLE-DNEMKSMYNTDSGVGDSAD 409
           YD     LG+   +E  + + ++YNTD+  GDS+D
Sbjct: 159 YDVRRPNLGSTSFVEMSSALSNIYNTDASDGDSSD 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,714
Number of Sequences: 5004
Number of extensions: 36479
Number of successful extensions: 123
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)