Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 139 FGRFLDNHLGEL 174
           FGR++DN LGEL
Sbjct: 622 FGRYVDNLLGEL 633


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 477  PPLEDNEMKSMYNTDSGVGDSADAVSRLRQVYATRKLSETFHQLTDV 337
            PPLE N + + YN  + V D  + ++  ++   T     T+ + TD+
Sbjct: 1236 PPLEPNGIITKYNLYTRVVDGREELNHGKR---TLPAKNTYFEATDL 1279


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 477  PPLEDNEMKSMYNTDSGVGDSADAVSRLRQVYATRKLSETFHQLTDV 337
            PPLE N + + YN  + V D  + ++  ++   T     T+ + TD+
Sbjct: 1232 PPLEPNGIITKYNLYTRVVDGREELNHGKR---TLPAKNTYFEATDL 1275


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 363 ETFHQLTDVTLQRDPE 316
           E+FH+LT  T   DP+
Sbjct: 222 ESFHRLTSNTFDYDPK 237


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 131 KSHSVDFSITISESCS 178
           K + +DF I ++E C+
Sbjct: 519 KENEIDFKIEVTEDCN 534


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 351 QLTDVTLQRDPEKRHSASQLLNHAFFKQI 265
           +L+   L  +P   +SAS  L+HA +  +
Sbjct: 175 KLSQFDLVANPTANYSASTTLSHAEYSML 203


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 348 LTDVTLQRDPEKRHSASQLLNHAFFKQIRR 259
           L +  L  +P KR +AS+ L H +  Q  R
Sbjct: 146 LINQMLTVNPSKRITASEALKHPWICQRER 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,434
Number of Sequences: 438
Number of extensions: 2580
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)