Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...   115   2e-26
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...   115   2e-26
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...   115   2e-26
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    50   1e-06
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z19158-2|CAA79571.3|  262|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   2.0  
AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   8.1  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score =  115 bits (276), Expect = 2e-26
 Identities = 54/71 (76%), Positives = 61/71 (85%)
 Frame = -1

Query: 521 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 342
           KF E+KEKVDRRTGK  E  PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMR
Sbjct: 337 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMR 396

Query: 341 QTVAVGVIKAV 309
           QTVAVGVIK+V
Sbjct: 397 QTVAVGVIKSV 407


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score =  115 bits (276), Expect = 2e-26
 Identities = 54/71 (76%), Positives = 61/71 (85%)
 Frame = -1

Query: 521 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 342
           KF E+KEKVDRRTGK  E  PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMR
Sbjct: 371 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMR 430

Query: 341 QTVAVGVIKAV 309
           QTVAVGVIK+V
Sbjct: 431 QTVAVGVIKSV 441


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score =  115 bits (276), Expect = 2e-26
 Identities = 54/71 (76%), Positives = 61/71 (85%)
 Frame = -1

Query: 521 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 342
           KF E+KEKVDRRTGK  E  PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMR
Sbjct: 371 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMR 430

Query: 341 QTVAVGVIKAV 309
           QTVAVGVIK+V
Sbjct: 431 QTVAVGVIKSV 441


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
 Frame = -1

Query: 497 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 321
           +D++TG+      K +K  +  I+ L   +P  +E F+E+P LGRF +RD  +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527

Query: 320 IKAV 309
           +K V
Sbjct: 528 LKVV 531


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = -1

Query: 518 FAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 339
           F  +   +++  G+  +  P+ I  G +A+V +     + +E+F     LGR   R    
Sbjct: 519 FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGN 578

Query: 338 TVAVGVIKAV 309
           T+A G+++ V
Sbjct: 579 TIAAGIVEKV 588


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = -1

Query: 518 FAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 339
           F  +   +++  G+  +  P+ I  G +A+V +     + +E+F     LGR   R    
Sbjct: 537 FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGN 596

Query: 338 TVAVGVIKAV 309
           T+A G+++ V
Sbjct: 597 TIAAGIVEKV 606


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 193 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 348
           M Y +C    ++N   Y   L   ++A+V LPPP ++ +  ++   A  C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237


>Z19158-2|CAA79571.3|  262|Caenorhabditis elegans Hypothetical
           protein T23G5.3 protein.
          Length = 262

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +1

Query: 247 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 399
           +P+V  +  L   PPP    L +LM P  TV +  R  K P G NS K  T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 168 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 61
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical
           protein M04G7.1 protein.
          Length = 258

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 307 LTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRG 408
           + AL  P T ++CL +   K P  GN+  D T RG
Sbjct: 174 MMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRG 208


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 213 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 97
           H TA L S K V+  K+    F+ +  ++ C+  LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,965
Number of Sequences: 27780
Number of extensions: 208923
Number of successful extensions: 600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)