Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    32   0.060
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    27   1.3  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   3.0  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   5.2  
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    25   9.0  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 31.9 bits (69), Expect = 0.060
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 212 YKRIL*NDG--FIQFLFYISHFYYYNLRFSL-PSNHVSHFNYIDFIFFVSD 355
           YKR+L N+   F + + Y+ HF    L  +  PSN V++ NY + + F+ D
Sbjct: 494 YKRLLYNEWERFAKLVAYLDHFGDEILSINFDPSNAVTYINYANKVAFIRD 544


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 251 LFYISHFYYYNLRFSLPSNHVSHFNYIDFIFF 346
           L Y++  Y    + SLP +H  ++  I ++FF
Sbjct: 75  LIYLADKYDTERKISLPRDHPEYYKVIQYLFF 106


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 121 VRFKKEKKTVVFINCHFFAFCVNNYRFRYFIQTY 222
           +RF K  +  ++I     A+C  NY +R FIQ Y
Sbjct: 3   IRFLKRLRAPLYIQN---AYCSKNYFYRSFIQYY 33


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 158 IKTTVFFSFLNLTPYNY*YWMN 93
           IKT VF SF N  P  +  WM+
Sbjct: 129 IKTEVFKSFFNSMPKEFEVWMS 150


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 408 SVSLENDYNILFDVTDAQSDTKNIKSI 328
           S+S+         + D QSD KN+KSI
Sbjct: 44  SLSVAKGQQHTLTIADVQSDMKNLKSI 70


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 481 KRRSVSQAQRTRAFHYNALYII 416
           + +S+ ++Q+ R+F+ N LYI+
Sbjct: 851 RAKSIPKSQQVRSFYINDLYIL 872


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,729
Number of Sequences: 5004
Number of extensions: 36202
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)