Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    28   0.73 
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    27   2.2  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   3.9  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   6.8  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   9.0  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    25   9.0  

>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -2

Query: 490 LMFGGVHGIPVPVPLNFLRLYEYLRHSEILLFFSYFSPFASADIHGTFRHSFSA 329
           L+FGG   IP   P+N      YL  S I LFF+Y+     AD    +  + SA
Sbjct: 677 LIFGGTGYIPPATPVN------YLAWSGIGLFFNYYLKKIFADWWQKYNFTLSA 724


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 334 KTNAEKCREYRQRQKEKNMKKKAKFRNVADTRKVAKSST 450
           K+   K  + +QRQK+KN KK         ++K  K  T
Sbjct: 37  KSKLTKLGKQKQRQKQKNTKKDTLVNRETPSKKSQKLET 75


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 349 KCREYRQRQKEKNMKKKAKFRNVAD 423
           + +E  +RQ EK MK + K RN+ D
Sbjct: 208 RLKEQLERQVEKRMKPRRKLRNMDD 232


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 247 KSKIAVVYFSPETVL*AFRPFQQNSGSMPKTNAEKCREYRQRQKEKNM--KKKAKFRNVA 420
           + KI    FSP + + +F      S    K N+E+  +       K    +KK KF+ V 
Sbjct: 492 RDKILQTNFSPRSTIDSF------SNISKKRNSEEANDENDETNLKIPIPEKKRKFQEVL 545

Query: 421 DTRKVAKSSTE 453
            ++ +  SSTE
Sbjct: 546 QSKNILVSSTE 556


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 355 REYRQRQKEKNMKKKAKFRNVADTRKVAK 441
           RE +Q+QKE+  KK  K +  AD  K+A+
Sbjct: 662 REEKQKQKERE-KKLKKQQQEADREKMAR 689


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 355 REYRQRQKEKNMKKKAKFRN-VADTRKVAKSSTE 453
           REY +  +E+ + +KAK  +  A T+ V   STE
Sbjct: 176 REYAEDMREQELAEKAKLESESATTQSVETVSTE 209


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 319 SGSMPKTNAEKCREYRQRQKEKNMKKKAKFRNVADT 426
           + S    +A++ +  +QRQK+K  +K+AK   + DT
Sbjct: 43  TASQNNDSAKREKRKKQRQKQKE-RKRAKLLELQDT 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,386
Number of Sequences: 5004
Number of extensions: 30581
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)