Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320B08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0023 + 8171023-8171782,8172658-8172950                           31   0.74 
12_02_0556 + 20415683-20416841,20417563-20417726,20417837-204179...    28   5.2  
07_01_1134 + 10614565-10615821                                         28   5.2  
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980...    28   5.2  
04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548           28   5.2  
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819...    27   9.1  

>10_05_0023 + 8171023-8171782,8172658-8172950
          Length = 350

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 373 QKEKNMKKKAKFRNVADTRKVAKSSTE 453
           +K KN K+KA  R   + RK+A SSTE
Sbjct: 122 KKSKNQKRKAPMRTEEEVRKMAISSTE 148


>12_02_0556 +
           20415683-20416841,20417563-20417726,20417837-20417926,
           20427889-20429145
          Length = 889

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 373 QKEKNMKKKAKFRNVADTRKVAKSSTE 453
           +K KN K+KA  R   + RK+  +STE
Sbjct: 634 KKSKNQKRKAPMRTEEEVRKMTITSTE 660


>07_01_1134 + 10614565-10615821
          Length = 418

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 373 QKEKNMKKKAKFRNVADTRKVAKSSTE 453
           +K KN K+KA  R   + RK+  +STE
Sbjct: 163 KKSKNQKRKAPMRTEEEVRKMTITSTE 189


>05_03_0201 -
           9762563-9762843,9763037-9763919,9763988-9764036,
           9806710-9807680
          Length = 727

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 373 QKEKNMKKKAKFRNVADTRKVAKSSTE 453
           +K KN K+KA  R   + RK+  +STE
Sbjct: 503 KKSKNQKRKAPMRTEEEVRKMTITSTE 529


>04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548
          Length = 529

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 373 QKEKNMKKKAKFRNVADTRKVAKSSTE 453
           +K KN K+KA  R   + RK+  +STE
Sbjct: 274 KKSKNQKRKAPMRTEEEVRKMTITSTE 300


>05_05_0127 -
           22580720-22580808,22580936-22580987,22581703-22581908,
           22582019-22582152,22582239-22582369,22583333-22583392,
           22583615-22583755,22583880-22584347,22584524-22584686,
           22585373-22585476,22585755-22585853,22586177-22586281,
           22586516-22586596,22587168-22587986,22588497-22588553
          Length = 902

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 346 EKCREYRQRQKEKNMKKKAKFRNVADTRKV 435
           +K RE+R ++ EKN    +K RN A ++ V
Sbjct: 545 KKRREHRSKRFEKNQNSSSKSRNSAASKDV 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,398,897
Number of Sequences: 37544
Number of extensions: 162572
Number of successful extensions: 381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)