Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320B07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 32 0.045
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 30 0.24
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 0.42
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 26 3.9
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 5.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 5.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 5.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 5.2
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 5.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 5.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 5.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 5.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 5.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 5.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 5.2
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 6.8
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 6.8
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 25 6.8
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 25 9.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.0
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 32.3 bits (70), Expect = 0.045
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Frame = +1
Query: 88 ENKVDELPDLDNLLQCPVCYE-IPTGHIFQCNEGHNVCGRC----KVRLSVCPVCRALFF 252
+ K+ L LD+ L+C +C+E I C+ H C C +CP CRA
Sbjct: 14 QTKIPSLKGLDSSLRCLICHEYFRAPLITSCS--HTFCSFCIRDYLREHPMCPACRAPEQ 71
Query: 253 GTR---NYAMEELIANVRKLR----AFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGE 411
+R N +EE++ + + +R F V + +L + + A+DS S + E+ +
Sbjct: 72 ESRLRKNTILEEILESFKVIRPTLFEFLKVENVPKPVLQA-PETVIAQDSASGDEEWEDD 130
Query: 412 DENNDNQNSV 441
+N + S+
Sbjct: 131 LASNSSPASI 140
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 29.9 bits (64), Expect = 0.24
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 319 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 450
G TRGL S SST +R S + + ED+ + Q++VV P
Sbjct: 24 GSSFTRGLKNSTLSSTSSRKSSDEKSRKSSEDKRSP-QSTVVQP 66
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 94 KVDELPDLDNLL-QCPVCYEIPTGHIFQCNEGHNVCGRC 207
K+D L + L+ +CP+C P + N H CG C
Sbjct: 863 KIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDC 901
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 244 LFFGTRNYAMEELIANVRKLRAFKLGGKVTRGLLAS 351
LF GTRN + ++A ++ R + + + GLL +
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTN 147
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/60 (20%), Positives = 32/60 (53%)
Frame = +1
Query: 271 MEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 450
++E I +++++ ++ G R + + S+ A+ DN LGE++++ + + + P
Sbjct: 254 IDEAIDRLKEVKRRRIEGFERRKMRREQNLSSDAKVEDQDNDSMLGENKSSVSTETALKP 313
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 5.2
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 91 NKVDELPDLDNLLQCPVCY 147
N + + + D+ ++CPVCY
Sbjct: 156 NNLQRIEEPDDFVECPVCY 174
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 313 KLGGKVTRGLLASDSSSTPARDSG 384
+LGGK+ RG+ A S+T D G
Sbjct: 329 QLGGKIQRGIEAWGLSNTATSDEG 352
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 67 YIMSEIVENKVDELPDLDNLLQ--CPVCYEIPTGHIFQCNEGH 189
Y++S+ EN+V++ L L + + +E PTG+I C E H
Sbjct: 120 YLLSKKSENEVEQRL-LKALAEKTAKLIFEKPTGYIDSCEEFH 161
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Frame = -2
Query: 259 WFQKIVLCIPGRQKAELYICHIHYDLHCIGKYDL*GFHNILDTEVSYPSLAIRQPYFL-- 86
W+ K + + G + + + L C KY++ + L + + P AI FL
Sbjct: 168 WYPKTLWLLRGNHECAHLTDYFTFKLECTHKYNIKVYEACLQSFNALPLAAIMNKQFLCV 227
Query: 85 ---LSPTLCKITSI 53
LSP L + I
Sbjct: 228 HGGLSPELHTLNDI 241
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 133 CPVCYEIPTGHIFQCNEGHNVCGRC 207
C C E P + + + G VCG C
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSC 44
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 221 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 343
L ++AE F E G++ W+ L+ G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQPGKVQGSNKGDRLTKTF 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,401
Number of Sequences: 5004
Number of extensions: 44001
Number of successful extensions: 147
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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